circlator 1.5.5-1 in ubuntu - bionic / universe

About

This package is 4.1 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/c/circlator/circlator_1.5.5-1_all.deb .

View its full control file here: debian/control.

Description

circularize genome assemblies

Relations

This package depends on: fastaq (>= 3.12.1), python3-openpyxl, python3-pymummer (>= 0.9.0), python3-pysam (>= 0.8.1), python3:any (>= 3.3.2-2~), prodigal, bwa (>= 0.7.12), mummer, samtools, spades.

This package does not recommend any other package.

This package suggests: canu.

This package does not conflict with any other package.

Package Contents

This package is indexed.

circlator 1.5.5-1 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 161 bytes
prerm text/x-shellscript N/A N/A 393 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/circlator text/x-python root:root 0o755 1.9 KB
/usr/lib/ root:root 0o755
/usr/lib/python3/ root:root 0o755
/usr/lib/python3/dist-packages/ root:root 0o755
/usr/lib/python3/dist-packages/circlator/ root:root 0o755
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/ root:root 0o755
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/dependency_links.txt application/octet-stream root:root 0o644 1 byte
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/PKG-INFO text/plain root:root 0o644 615 bytes
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/requires.txt application/x-empty root:root 0o644 0 bytes
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/top_level.txt text/plain root:root 0o644 10 bytes
/usr/lib/python3/dist-packages/circlator/assemble.py text/x-c++ root:root 0o644 6.2 KB
/usr/lib/python3/dist-packages/circlator/assembly.py text/x-c++ root:root 0o644 7.1 KB
/usr/lib/python3/dist-packages/circlator/bamfilter.py text/x-c++ root:root 0o644 9.9 KB
/usr/lib/python3/dist-packages/circlator/clean.py text/x-c++ root:root 0o644 11.4 KB
/usr/lib/python3/dist-packages/circlator/common.py text/x-c++ root:root 0o644 1.6 KB
/usr/lib/python3/dist-packages/circlator/data/ root:root 0o755
/usr/lib/python3/dist-packages/circlator/data/dnaA.fasta text/plain root:root 0o644 5.2 MB
/usr/lib/python3/dist-packages/circlator/data/test_contigs.fa text/plain root:root 0o644 294.9 KB
/usr/lib/python3/dist-packages/circlator/data/test_for_reads.fa text/plain root:root 0o644 595.7 KB
/usr/lib/python3/dist-packages/circlator/data/test_make_data.sh text/x-shellscript root:root 0o755 628 bytes
/usr/lib/python3/dist-packages/circlator/data/test_reads.fq.gz application/gzip root:root 0o644 3.5 MB
/usr/lib/python3/dist-packages/circlator/data/test_ref.fa text/plain root:root 0o644 297.9 KB
/usr/lib/python3/dist-packages/circlator/data/test_ref.fa.fai text/plain root:root 0o644 17 bytes
/usr/lib/python3/dist-packages/circlator/dnaa.py text/x-c++ root:root 0o644 3.4 KB
/usr/lib/python3/dist-packages/circlator/external_progs.py text/x-c++ root:root 0o644 3.3 KB
/usr/lib/python3/dist-packages/circlator/__init__.py text/x-python root:root 0o644 398 bytes
/usr/lib/python3/dist-packages/circlator/mapping.py text/x-c++ root:root 0o644 3.2 KB
/usr/lib/python3/dist-packages/circlator/merge.py text/x-c++ root:root 0o644 38.7 KB
/usr/lib/python3/dist-packages/circlator/minimus2.py text/x-c++ root:root 0o644 6.7 KB
/usr/lib/python3/dist-packages/circlator/program.py text/x-c++ root:root 0o644 3.1 KB
/usr/lib/python3/dist-packages/circlator/start_fixer.py text/x-c++ root:root 0o644 13.3 KB
/usr/lib/python3/dist-packages/circlator/tasks/ root:root 0o755
/usr/lib/python3/dist-packages/circlator/tasks/all.py text/x-c++ root:root 0o644 15.0 KB
/usr/lib/python3/dist-packages/circlator/tasks/assemble.py text/plain root:root 0o644 2.1 KB
/usr/lib/python3/dist-packages/circlator/tasks/bam2reads.py text/plain root:root 0o644 2.0 KB
/usr/lib/python3/dist-packages/circlator/tasks/clean.py text/plain root:root 0o644 1.9 KB
/usr/lib/python3/dist-packages/circlator/tasks/fixstart.py text/plain root:root 0o644 1.5 KB
/usr/lib/python3/dist-packages/circlator/tasks/get_dnaa.py text/x-c++ root:root 0o644 1.5 KB
/usr/lib/python3/dist-packages/circlator/tasks/__init__.py text/x-python root:root 0o644 211 bytes
/usr/lib/python3/dist-packages/circlator/tasks/mapreads.py text/plain root:root 0o644 1.0 KB
/usr/lib/python3/dist-packages/circlator/tasks/merge.py text/plain root:root 0o644 4.6 KB
/usr/lib/python3/dist-packages/circlator/tasks/minimus2.py text/x-c++ root:root 0o644 1.3 KB
/usr/lib/python3/dist-packages/circlator/tasks/progcheck.py text/x-python root:root 0o644 452 bytes
/usr/lib/python3/dist-packages/circlator/tasks/test.py text/x-python root:root 0o644 1.6 KB
/usr/lib/python3/dist-packages/circlator/tasks/version.py text/x-python root:root 0o644 113 bytes
/usr/lib/python3/dist-packages/circlator/versions.py text/x-python root:root 0o644 1.3 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/circlator/ root:root 0o755
/usr/share/doc/circlator/changelog.Debian.gz application/gzip root:root 0o644 729 bytes
/usr/share/doc/circlator/copyright text/plain root:root 0o644 1.1 KB
/usr/share/doc/circlator/README.md text/plain root:root 0o644 443 bytes
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/circlator.1.gz application/gzip root:root 0o644 354 bytes

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