libblasr-dev 0~20151014+gitbe5d1bf-2 in ubuntu - xenial / universe

About

This package is 1.5 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/p/pbseqlib/libblasr-dev_0~20151014+gitbe5d1bf-2_amd64.deb .

View its full control file here: debian/control.

Description

tools for aligning PacBio reads to target sequences (development files)

Relations

This package depends on: libblasr (= 0~20151014+gitbe5d1bf-2).

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

libblasr-dev 0~20151014+gitbe5d1bf-2 is in ubuntu - xenial / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/include/ root:root 0o755
/usr/include/blasr/ root:root 0o755
/usr/include/blasr/algorithms/ root:root 0o755
/usr/include/blasr/algorithms/alignment/ root:root 0o755
/usr/include/blasr/algorithms/alignment/AffineGuidedAlign.hpp text/x-c root:root 0o644 20.7 KB
/usr/include/blasr/algorithms/alignment/AffineKBandAlign.hpp text/x-c root:root 0o644 13.8 KB
/usr/include/blasr/algorithms/alignment/AlignmentFormats.hpp text/plain root:root 0o644 216 bytes
/usr/include/blasr/algorithms/alignment/AlignmentUtils.hpp text/x-c root:root 0o644 5.2 KB
/usr/include/blasr/algorithms/alignment/AlignmentUtilsImpl.hpp text/x-c root:root 0o644 17.7 KB
/usr/include/blasr/algorithms/alignment/BaseScoreFunction.hpp text/x-c++ root:root 0o644 469 bytes
/usr/include/blasr/algorithms/alignment/DistanceMatrixScoreFunction.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/blasr/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp text/x-c root:root 0o644 3.4 KB
/usr/include/blasr/algorithms/alignment/ExtendAlign.hpp text/x-c++ root:root 0o644 14.0 KB
/usr/include/blasr/algorithms/alignment/FullQVAlign.hpp text/x-c root:root 0o644 5.2 KB
/usr/include/blasr/algorithms/alignment/GraphPaper.hpp text/x-c root:root 0o644 849 bytes
/usr/include/blasr/algorithms/alignment/GraphPaperImpl.hpp text/plain root:root 0o644 4.2 KB
/usr/include/blasr/algorithms/alignment/GuidedAlign.hpp text/x-c++ root:root 0o644 20.6 KB
/usr/include/blasr/algorithms/alignment/IDSScoreFunction.hpp text/x-c root:root 0o644 4.2 KB
/usr/include/blasr/algorithms/alignment/KBandAlign.hpp text/x-c root:root 0o644 10.2 KB
/usr/include/blasr/algorithms/alignment/OneGapAlignment.hpp text/x-c root:root 0o644 12.4 KB
/usr/include/blasr/algorithms/alignment/QualityValueScoreFunction.hpp text/x-c++ root:root 0o644 1.8 KB
/usr/include/blasr/algorithms/alignment/ScoreMatrices.hpp text/x-c root:root 0o644 383 bytes
/usr/include/blasr/algorithms/alignment/sdp/ root:root 0o755
/usr/include/blasr/algorithms/alignment/SDPAlign.hpp text/x-c root:root 0o644 2.4 KB
/usr/include/blasr/algorithms/alignment/SDPAlignImpl.hpp text/x-c root:root 0o644 25.9 KB
/usr/include/blasr/algorithms/alignment/sdp/FragmentSort.hpp text/x-c++ root:root 0o644 425 bytes
/usr/include/blasr/algorithms/alignment/sdp/FragmentSortImpl.hpp text/x-c root:root 0o644 374 bytes
/usr/include/blasr/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h text/x-c root:root 0o644 5.6 KB
/usr/include/blasr/algorithms/alignment/sdp/SDPColumn.hpp text/x-c++ root:root 0o644 545 bytes
/usr/include/blasr/algorithms/alignment/sdp/SDPFragment.hpp text/x-c++ root:root 0o644 2.8 KB
/usr/include/blasr/algorithms/alignment/sdp/SDPSet.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/blasr/algorithms/alignment/sdp/SDPSetImpl.hpp text/x-c root:root 0o644 2.2 KB
/usr/include/blasr/algorithms/alignment/sdp/SparseDynamicProgramming.hpp text/x-c root:root 0o644 1.2 KB
/usr/include/blasr/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp text/x-c root:root 0o644 10.4 KB
/usr/include/blasr/algorithms/alignment/sdp/VariableLengthSDPFragment.h text/x-c root:root 0o644 862 bytes
/usr/include/blasr/algorithms/alignment/StringToScoreMatrix.hpp text/x-c root:root 0o644 212 bytes
/usr/include/blasr/algorithms/alignment/SWAlign.hpp text/x-c root:root 0o644 540 bytes
/usr/include/blasr/algorithms/alignment/SWAlignImpl.hpp text/x-c root:root 0o644 15.1 KB
/usr/include/blasr/algorithms/anchoring/ root:root 0o755
/usr/include/blasr/algorithms/anchoring/BasicEndpoint.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/blasr/algorithms/anchoring/BasicEndpointImpl.hpp text/x-c root:root 0o644 2.3 KB
/usr/include/blasr/algorithms/anchoring/BWTSearch.hpp text/x-c root:root 0o644 1000 bytes
/usr/include/blasr/algorithms/anchoring/BWTSearchImpl.hpp text/plain root:root 0o644 446 bytes
/usr/include/blasr/algorithms/anchoring/ClusterProbability.hpp text/x-c root:root 0o644 366 bytes
/usr/include/blasr/algorithms/anchoring/Coordinate.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/blasr/algorithms/anchoring/FindMaxInterval.hpp text/x-c++ root:root 0o644 6.0 KB
/usr/include/blasr/algorithms/anchoring/FindMaxIntervalImpl.hpp text/x-c root:root 0o644 32.7 KB
/usr/include/blasr/algorithms/anchoring/GlobalChain.hpp text/x-c root:root 0o644 1.3 KB
/usr/include/blasr/algorithms/anchoring/GlobalChainImpl.hpp text/x-c root:root 0o644 6.3 KB
/usr/include/blasr/algorithms/anchoring/LISPValue.hpp text/x-c root:root 0o644 731 bytes
/usr/include/blasr/algorithms/anchoring/LISPValueImpl.hpp text/x-c root:root 0o644 4.6 KB
/usr/include/blasr/algorithms/anchoring/LISPValueWeightor.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/blasr/algorithms/anchoring/LISPValueWeightorImpl.hpp text/x-c root:root 0o644 3.7 KB
/usr/include/blasr/algorithms/anchoring/LISQValueWeightor.hpp text/x-c++ root:root 0o644 878 bytes
/usr/include/blasr/algorithms/anchoring/LISSizeWeightor.hpp text/x-c++ root:root 0o644 277 bytes
/usr/include/blasr/algorithms/anchoring/LISSizeWeightorImpl.hpp text/plain root:root 0o644 364 bytes
/usr/include/blasr/algorithms/anchoring/LongestIncreasingSubsequence.hpp text/x-c root:root 0o644 813 bytes
/usr/include/blasr/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp text/plain root:root 0o644 3.3 KB
/usr/include/blasr/algorithms/anchoring/MapBySuffixArray.hpp text/x-c root:root 0o644 1.6 KB
/usr/include/blasr/algorithms/anchoring/MapBySuffixArrayImpl.hpp text/x-c root:root 0o644 11.0 KB
/usr/include/blasr/algorithms/anchoring/PrioritySearchTree.hpp text/x-c++ root:root 0o644 1.9 KB
/usr/include/blasr/algorithms/anchoring/PrioritySearchTreeImpl.hpp text/plain root:root 0o644 9.8 KB
/usr/include/blasr/algorithms/anchoring/ScoreAnchors.hpp text/x-c root:root 0o644 1.5 KB
/usr/include/blasr/algorithms/anchoring/ScoreAnchorsImpl.hpp text/plain root:root 0o644 4.9 KB
/usr/include/blasr/algorithms/compare/ root:root 0o755
/usr/include/blasr/algorithms/compare/CompareStrings.hpp text/x-c++ root:root 0o644 1.8 KB
/usr/include/blasr/algorithms/sorting/ root:root 0o755
/usr/include/blasr/algorithms/sorting/DifferenceCovers.hpp text/x-c root:root 0o644 1.2 KB
/usr/include/blasr/algorithms/sorting/Karkkainen.hpp text/x-c root:root 0o644 4.3 KB
/usr/include/blasr/algorithms/sorting/LightweightSuffixArray.hpp text/x-c++ root:root 0o644 2.9 KB
/usr/include/blasr/algorithms/sorting/MultikeyQuicksort.hpp text/x-c root:root 0o644 1.6 KB
/usr/include/blasr/algorithms/sorting/qsufsort.hpp text/x-c++ root:root 0o644 14.4 KB
/usr/include/blasr/anchoring/ root:root 0o755
/usr/include/blasr/anchoring/AnchorParameters.hpp text/x-c++ root:root 0o644 820 bytes
/usr/include/blasr/bwt/ root:root 0o755
/usr/include/blasr/bwt/BWT.hpp text/x-c++ root:root 0o644 7.7 KB
/usr/include/blasr/bwt/Occ.hpp text/x-c++ root:root 0o644 7.8 KB
/usr/include/blasr/bwt/PackedHash.hpp text/x-c++ root:root 0o644 12.0 KB
/usr/include/blasr/bwt/Pos.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/blasr/datastructures/ root:root 0o755
/usr/include/blasr/datastructures/alignment/ root:root 0o755
/usr/include/blasr/datastructures/alignment/AlignedPair.h text/x-c root:root 0o644 263 bytes
/usr/include/blasr/datastructures/alignment/AlignmentCandidate.hpp text/x-c++ root:root 0o644 12.8 KB
/usr/include/blasr/datastructures/alignment/AlignmentContext.hpp text/x-c++ root:root 0o644 652 bytes
/usr/include/blasr/datastructures/alignment/AlignmentGapList.h text/x-c root:root 0o644 380 bytes
/usr/include/blasr/datastructures/alignment/Alignment.hpp text/x-c++ root:root 0o644 5.0 KB
/usr/include/blasr/datastructures/alignment/AlignmentMap.hpp text/x-c root:root 0o644 402 bytes
/usr/include/blasr/datastructures/alignment/AlignmentStats.hpp text/x-c++ root:root 0o644 484 bytes
/usr/include/blasr/datastructures/alignment/ByteAlignment.h text/x-c root:root 0o644 12.3 KB
/usr/include/blasr/datastructures/alignment/CmpFile.hpp text/x-c root:root 0o644 784 bytes
/usr/include/blasr/datastructures/alignment/CmpIndexedStringTable.h text/x-c root:root 0o644 1.4 KB
/usr/include/blasr/datastructures/alignment/CmpReadGroupTable.h text/x-c root:root 0o644 394 bytes
/usr/include/blasr/datastructures/alignment/CmpRefSeqTable.h text/x-c root:root 0o644 370 bytes
/usr/include/blasr/datastructures/alignment/FilterCriteria.hpp text/x-c++ root:root 0o644 5.2 KB
/usr/include/blasr/datastructures/alignment/Path.h text/plain root:root 0o644 711 bytes
/usr/include/blasr/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp text/x-c root:root 0o644 2.6 KB
/usr/include/blasr/datastructures/alignmentset/ root:root 0o755
/usr/include/blasr/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp text/x-c++ root:root 0o644 2.6 KB
/usr/include/blasr/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp text/x-c root:root 0o644 8.9 KB
/usr/include/blasr/datastructures/alignmentset/SAMQVConversion.hpp text/plain root:root 0o644 318 bytes
/usr/include/blasr/datastructures/alignmentset/SAMSupplementalQVList.hpp text/x-c++ root:root 0o644 907 bytes
/usr/include/blasr/datastructures/anchoring/ root:root 0o755
/usr/include/blasr/datastructures/anchoring/AnchorParameters.hpp text/x-c++ root:root 0o644 807 bytes
/usr/include/blasr/datastructures/anchoring/ClusterList.hpp text/x-c++ root:root 0o644 560 bytes
/usr/include/blasr/datastructures/anchoring/MatchPos.hpp text/x-c++ root:root 0o644 4.2 KB
/usr/include/blasr/datastructures/anchoring/WeightedInterval.hpp text/x-c++ root:root 0o644 2.5 KB
/usr/include/blasr/files/ root:root 0o755
/usr/include/blasr/files/BaseSequenceIO.hpp text/x-c++ root:root 0o644 507 bytes
/usr/include/blasr/files/CCSIterator.hpp text/x-c++ root:root 0o644 370 bytes
/usr/include/blasr/files/FragmentCCSIterator.hpp text/x-c++ root:root 0o644 565 bytes
/usr/include/blasr/files/ReaderAgglomerate.hpp text/x-c++ root:root 0o644 3.3 KB
/usr/include/blasr/files/ReaderAgglomerateImpl.hpp text/plain root:root 0o644 1.0 KB
/usr/include/blasr/format/ root:root 0o755
/usr/include/blasr/format/BAMPrinter.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/blasr/format/BAMPrinterImpl.hpp text/x-c root:root 0o644 8.0 KB
/usr/include/blasr/format/CompareSequencesPrinter.hpp text/x-c root:root 0o644 530 bytes
/usr/include/blasr/format/CompareSequencesPrinterImpl.hpp text/plain root:root 0o644 2.6 KB
/usr/include/blasr/format/IntervalPrinter.hpp text/x-c root:root 0o644 479 bytes
/usr/include/blasr/format/SAMHeaderPrinter.hpp text/x-c++ root:root 0o644 10.2 KB
/usr/include/blasr/format/SAMPrinter.hpp text/x-c root:root 0o644 3.4 KB
/usr/include/blasr/format/SAMPrinterImpl.hpp text/x-c root:root 0o644 10.0 KB
/usr/include/blasr/format/StickAlignmentPrinter.hpp text/x-c root:root 0o644 4.5 KB
/usr/include/blasr/format/SummaryPrinter.hpp text/x-c root:root 0o644 337 bytes
/usr/include/blasr/format/VulgarPrinter.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/blasr/format/XMLPrinter.hpp text/x-c root:root 0o644 3.8 KB
/usr/include/blasr/ipc/ root:root 0o755
/usr/include/blasr/ipc/SharedMemoryAllocator.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/blasr/MappingMetrics.hpp text/x-c++ root:root 0o644 2.7 KB
/usr/include/blasr/qvs/ root:root 0o755
/usr/include/blasr/qvs/QualityValueProfile.hpp text/x-c++ root:root 0o644 591 bytes
/usr/include/blasr/simulator/ root:root 0o755
/usr/include/blasr/simulator/CDFMap.hpp text/x-c++ root:root 0o644 1.1 KB
/usr/include/blasr/simulator/ContextOutputList.hpp text/x-c++ root:root 0o644 2.9 KB
/usr/include/blasr/simulator/ContextSample.hpp text/x-c++ root:root 0o644 577 bytes
/usr/include/blasr/simulator/ContextSet.hpp text/x-c++ root:root 0o644 395 bytes
/usr/include/blasr/simulator/LengthHistogram.hpp text/x-c++ root:root 0o644 484 bytes
/usr/include/blasr/simulator/OutputList.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/blasr/simulator/OutputSample.hpp text/x-c++ root:root 0o644 1.5 KB
/usr/include/blasr/simulator/OutputSampleList.hpp text/x-c++ root:root 0o644 767 bytes
/usr/include/blasr/simulator/OutputSampleListSet.hpp text/x-c root:root 0o644 3.3 KB
/usr/include/blasr/simulator/QualitySample.hpp text/x-c++ root:root 0o644 540 bytes
/usr/include/blasr/statistics/ root:root 0o755
/usr/include/blasr/statistics/AnchorDistributionTable.hpp text/plain root:root 0o644 2.5 MB
/usr/include/blasr/statistics/cdfs.hpp text/x-c root:root 0o644 36.7 KB
/usr/include/blasr/statistics/LookupAnchorDistribution.hpp text/x-c root:root 0o644 308 bytes
/usr/include/blasr/statistics/pdfs.hpp text/x-c root:root 0o644 331 bytes
/usr/include/blasr/statistics/StatUtils.hpp text/x-c root:root 0o644 6.7 KB
/usr/include/blasr/statistics/StatUtilsImpl.hpp text/x-c root:root 0o644 1.2 KB
/usr/include/blasr/statistics/VarianceAccumulator.hpp text/x-c++ root:root 0o644 423 bytes
/usr/include/blasr/statistics/VarianceAccumulatorImpl.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/blasr/suffixarray/ root:root 0o755
/usr/include/blasr/suffixarray/LCPTable.hpp text/x-c++ root:root 0o644 5.9 KB
/usr/include/blasr/suffixarray/SharedSuffixArray.hpp text/x-c++ root:root 0o644 2.6 KB
/usr/include/blasr/suffixarray/ssort.hpp text/plain root:root 0o644 14.7 KB
/usr/include/blasr/suffixarray/SuffixArray.hpp text/x-c++ root:root 0o644 38.8 KB
/usr/include/blasr/suffixarray/SuffixArrayTypes.hpp text/x-c root:root 0o644 560 bytes
/usr/include/blasr/tuples/ root:root 0o755
/usr/include/blasr/tuples/BaseTuple.hpp text/x-c++ root:root 0o644 559 bytes
/usr/include/blasr/tuples/CompressedDNATuple.hpp text/x-c root:root 0o644 1.8 KB
/usr/include/blasr/tuples/CountedTuple.h text/x-c root:root 0o644 206 bytes
/usr/include/blasr/tuples/DNATuple.hpp text/x-c++ root:root 0o644 2.5 KB
/usr/include/blasr/tuples/DNATupleImpl.hpp text/x-c root:root 0o644 6.2 KB
/usr/include/blasr/tuples/DNATupleList.h text/x-c root:root 0o644 1.4 KB
/usr/include/blasr/tuples/HashedTupleList.hpp text/x-c++ root:root 0o644 1.2 KB
/usr/include/blasr/tuples/HashedTupleListImpl.hpp text/plain root:root 0o644 3.1 KB
/usr/include/blasr/tuples/TupleCountTable.hpp text/x-c++ root:root 0o644 683 bytes
/usr/include/blasr/tuples/TupleCountTableImpl.hpp text/x-c root:root 0o644 2.8 KB
/usr/include/blasr/tuples/tuple.h text/x-c root:root 0o644 1.8 KB
/usr/include/blasr/tuples/TupleList.hpp text/x-c root:root 0o644 1.1 KB
/usr/include/blasr/tuples/TupleListImpl.hpp text/plain root:root 0o644 3.2 KB
/usr/include/blasr/tuples/TupleMask.h text/x-c root:root 0o644 577 bytes
/usr/include/blasr/tuples/TupleMatching.hpp text/x-c root:root 0o644 807 bytes
/usr/include/blasr/tuples/TupleMatchingImpl.hpp text/x-c root:root 0o644 3.3 KB
/usr/include/blasr/tuples/TupleMetrics.hpp text/x-c++ root:root 0o644 294 bytes
/usr/include/blasr/tuples/TupleOperations.h text/plain root:root 0o644 67 bytes
/usr/include/blasr/tuples/TupleTranslations.h text/plain root:root 0o644 58 bytes
/usr/include/blasr/utils/ root:root 0o755
/usr/include/blasr/utils/FileOfFileNames.hpp text/x-c++ root:root 0o644 667 bytes
/usr/include/blasr/utils/FileUtils.hpp text/x-c root:root 0o644 729 bytes
/usr/include/blasr/utils/LogUtils.hpp text/x-c root:root 0o644 372 bytes
/usr/include/blasr/utils/PhredUtils.hpp text/x-c root:root 0o644 185 bytes
/usr/include/blasr/utils/RangeUtils.hpp text/x-c++ root:root 0o644 1.3 KB
/usr/include/blasr/utils/RegionUtils.hpp text/x-c root:root 0o644 3.2 KB
/usr/include/blasr/utils/RegionUtilsImpl.hpp text/plain root:root 0o644 1.6 KB
/usr/include/blasr/utils/SimpleXMLUtils.hpp text/x-c root:root 0o644 2.0 KB
/usr/include/blasr/utils/TimeUtils.hpp text/x-c root:root 0o644 118 bytes
/usr/lib/ root:root 0o755
/usr/lib/x86_64-linux-gnu/ root:root 0o755
/usr/lib/x86_64-linux-gnu/blasr/ root:root 0o755
/usr/lib/x86_64-linux-gnu/blasr/libblasr.a application/x-archive root:root 0o644 3.1 MB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/libblasr-dev/ root:root 0o755
/usr/share/doc/libblasr-dev/changelog.Debian.gz root:root 0o777
/usr/share/doc/libblasr-dev/copyright text/plain root:root 0o644 4.6 KB

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