This package is 714.4 KB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/t/tophat/tophat_2.1.0+dfsg-1build1_amd64.deb
.
View its full control file here:
debian/control.
fast splice junction mapper for RNA-Seq reads
This package depends on:
libboost-system1.58.0, libboost-thread1.58.0, libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, bowtie2 | bowtie.
This package does not recommend any other package.
This package suggests:
cufflinks.
This package does not conflict with any other package.
tophat 2.1.0+dfsg-1build1 is in ubuntu - xenial / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/bam2fastx
|
application/x-executable | root:root | 0o755 | 120.6 KB |
/usr/bin/bam_merge
|
application/x-executable | root:root | 0o755 | 155.0 KB |
/usr/bin/bed_to_juncs
|
text/x-python | root:root | 0o755 | 1.9 KB |
/usr/bin/contig_to_chr_coords
|
text/x-python | root:root | 0o755 | 4.5 KB |
/usr/bin/fix_map_ordering
|
application/x-executable | root:root | 0o755 | 151.0 KB |
/usr/bin/gtf_juncs
|
application/x-executable | root:root | 0o755 | 235.2 KB |
/usr/bin/gtf_to_fasta
|
application/x-executable | root:root | 0o755 | 255.4 KB |
/usr/bin/juncs_db
|
application/x-executable | root:root | 0o755 | 179.2 KB |
/usr/bin/long_spanning_reads
|
application/x-executable | root:root | 0o755 | 463.7 KB |
/usr/bin/map2gtf
|
application/x-executable | root:root | 0o755 | 175.3 KB |
/usr/bin/prep_reads
|
application/x-executable | root:root | 0o755 | 211.7 KB |
/usr/bin/sam_juncs
|
application/x-executable | root:root | 0o755 | 263.2 KB |
/usr/bin/samtools_0.1.18
|
application/x-executable | root:root | 0o755 | 342.7 KB |
/usr/bin/segment_juncs
|
application/x-executable | root:root | 0o755 | 516.0 KB |
/usr/bin/sra_to_solid
|
text/x-python | root:root | 0o755 | 716 bytes |
/usr/bin/tophat
|
text/x-python | root:root | 0o755 | 167.2 KB |
/usr/bin/tophat2
|
text/x-shellscript | root:root | 0o755 | 241 bytes |
/usr/bin/tophat-fusion-post
|
text/x-python | root:root | 0o755 | 115.6 KB |
/usr/bin/tophat_reports
|
application/x-executable | root:root | 0o755 | 523.7 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 1.2 KB |
/usr/share/doc/tophat/copyright
|
text/plain | root:root | 0o644 | 2.6 KB |
/usr/share/doc/tophat/README
|
text/plain | root:root | 0o644 | 789 bytes |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/bam2fastx.1.gz
|
application/gzip | root:root | 0o644 | 516 bytes |
/usr/share/man/man1/bed_to_juncs.1.gz
|
application/gzip | root:root | 0o644 | 317 bytes |
/usr/share/man/man1/contig_to_chr_coords.1.gz
|
application/gzip | root:root | 0o644 | 349 bytes |
/usr/share/man/man1/tophat.1.gz
|
application/gzip | root:root | 0o644 | 1.9 KB |