This package is 599.1 KB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/t/tophat/tophat_2.0.9-1ubuntu1_amd64.deb
.
View its full control file here:
debian/control.
fast splice junction mapper for RNA-Seq reads
This package depends on:
libboost-system1.54.0, libboost-thread1.54.0, libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.3.3), python (>= 2.6.6-3~), bowtie2 | bowtie.
This package does not recommend any other package.
This package does not conflict with any other package.
tophat 2.0.9-1ubuntu1 is in ubuntu - trusty / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/bam2fastx
|
application/x-executable | root:root | 0o755 | 124.7 KB |
/usr/bin/bam_merge
|
application/x-executable | root:root | 0o755 | 155.2 KB |
/usr/bin/bed_to_juncs
|
text/x-python | root:root | 0o755 | 1.8 KB |
/usr/bin/contig_to_chr_coords
|
text/x-python | root:root | 0o755 | 4.5 KB |
/usr/bin/fix_map_ordering
|
application/x-executable | root:root | 0o755 | 155.2 KB |
/usr/bin/gtf_juncs
|
application/x-executable | root:root | 0o755 | 235.3 KB |
/usr/bin/gtf_to_fasta
|
application/x-executable | root:root | 0o755 | 255.5 KB |
/usr/bin/juncs_db
|
application/x-executable | root:root | 0o755 | 179.3 KB |
/usr/bin/long_spanning_reads
|
application/x-executable | root:root | 0o755 | 447.8 KB |
/usr/bin/map2gtf
|
application/x-executable | root:root | 0o755 | 183.5 KB |
/usr/bin/prep_reads
|
application/x-executable | root:root | 0o755 | 215.9 KB |
/usr/bin/sam_juncs
|
application/x-executable | root:root | 0o755 | 271.4 KB |
/usr/bin/segment_juncs
|
application/x-executable | root:root | 0o755 | 520.1 KB |
/usr/bin/sra_to_solid
|
text/x-python | root:root | 0o755 | 716 bytes |
/usr/bin/tophat
|
text/x-python | root:root | 0o755 | 166.0 KB |
/usr/bin/tophat2
|
text/x-shellscript | root:root | 0o755 | 241 bytes |
/usr/bin/tophat-fusion-post
|
text/x-python | root:root | 0o755 | 104.2 KB |
/usr/bin/tophat_reports
|
application/x-executable | root:root | 0o755 | 503.8 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 851 bytes |
/usr/share/doc/tophat/copyright
|
text/plain | root:root | 0o644 | 5.2 KB |
/usr/share/doc/tophat/NEWS.gz
|
application/gzip | root:root | 0o644 | 2.9 KB |
/usr/share/doc/tophat/README
|
text/plain | root:root | 0o644 | 1.4 KB |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/bam2fastx.1.gz
|
application/gzip | root:root | 0o644 | 491 bytes |
/usr/share/man/man1/tophat.1.gz
|
application/gzip | root:root | 0o644 | 1.9 KB |