/usr/share/EMBOSS/test/data/valid-3.3.vcf is in emboss-test 6.6.0-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ##fileformat=VCFv3.3
##fileDate=20090805
##phasing=partial
##test meta
##INFO=NS,1,Integer,"Number of Samples With Data"
##INFO=DP,1,Integer,"Total Depth"
##INFO=AN,1,Integer,"Total number of alleles in called genotypes"
##INFO=AC,-1,Integer,"Allele count in genotypes, for each ALT allele, in the same order as listed"
##INFO=AF,-1,Float,"Allele Frequency"
##INFO=AA,1,String,"Ancestral Allele"
##INFO=DB,0,Flag,"dbSNP membership, build 129"
##INFO=H2,0,Flag,"HapMap2 membership"
##FILTER=q10,"Quality below 10"
##FILTER=s50,"Less than 50% of samples have data"
##FORMAT=GT,1,String,"Genotype"
##FORMAT=GQ,1,Integer,"Genotype Quality"
##FORMAT=DP,1,Integer,"Read Depth"
##FORMAT=HQ,2,Integer,"Haplotype Quality"
##FORMAT=DS,1,Float,"Alternative Allele Dosage"
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
19 111 . A C 9.6 . . GT:HQ 0|0:10,10 0|0:10,10 0\1:3,3
19 112 . A G 10 . . GT:HQ 0|0:10,10 0|0:10,10 0\1:3,3
20 14370 rs6054257 G A 29 0 NS=3;DP=14;AF=0.5;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:-1,-1
20 17330 . T A 3 q10 NS=3;DP=11;AF=0.017 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3:-1,-1
20 1110696 rs6040355 A G,T 67 0 NS=2;DP=10;AF=0.333,0.667;AA=T;DB GT:GQ:DP:HQ 1|2:21:6:23,27 2|1:2:0:18,2 2/2:35:4:-1,-1
20 1230237 . T . 47 0 NS=3;DP=13;AA=T GT:GQ:DP:HQ 0|0:54:-1:56,60 0|0:48:4:51,51 0/0:61:2:-1,-1
20 1234567 microsat1 G D4,IGA 50 0 NS=3;DP=9;AA=G;AN=6;AC=3,1 GT:GQ:DP 0/1:-1:4 0/2:17:2 1/1:40:3
20 1235237 . T . -1 . . GT 0\0 0|0 ./.
X 10 rsTest A T 10 . . GT:DS 0:0.1 0/1:0.5 0|1:0.5
X 11 rsTest2 T A,G 10 q10;s50 . GT:DP:GQ 0:3:10 .:5:20 0:3:10
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