bedtools 2.17.0-1 in ubuntu - trusty / universe

About

This package is 420.8 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/b/bedtools/bedtools_2.17.0-1_amd64.deb .

View its full control file here: debian/control.

Description

suite of utilities for comparing genomic features

Relations

Package Contents

File	Mime Type	Owner	Mode	Size
/etc/		root:root	0o755
/etc/bash_completion.d/		root:root	0o755
/etc/bash_completion.d/bedtools	text/plain	root:root	0o644	638 bytes
/usr/		root:root	0o755
/usr/bin/		root:root	0o755
/usr/bin/annotateBed	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/bamToBed	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/bamToFastq	text/x-shellscript	root:root	0o755	43 bytes
/usr/bin/bed12ToBed6	text/x-shellscript	root:root	0o755	44 bytes
/usr/bin/bedpeToBam	text/x-shellscript	root:root	0o755	43 bytes
/usr/bin/bedToBam	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/bedToIgv	text/x-shellscript	root:root	0o755	36 bytes
/usr/bin/bedtools	application/x-executable	root:root	0o755	1.3 MB
/usr/bin/closestBed	text/x-shellscript	root:root	0o755	40 bytes
/usr/bin/clusterBed	text/x-shellscript	root:root	0o755	40 bytes
/usr/bin/complementBed	text/x-shellscript	root:root	0o755	43 bytes
/usr/bin/coverageBed	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/expandCols	text/x-shellscript	root:root	0o755	39 bytes
/usr/bin/fastaFromBed	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/flankBed	text/x-shellscript	root:root	0o755	38 bytes
/usr/bin/genomeCoverageBed	text/x-shellscript	root:root	0o755	42 bytes
/usr/bin/getOverlap	text/x-shellscript	root:root	0o755	40 bytes
/usr/bin/intersectBed	text/x-shellscript	root:root	0o755	42 bytes
/usr/bin/linksBed	text/x-shellscript	root:root	0o755	38 bytes
/usr/bin/mapBed	text/x-shellscript	root:root	0o755	36 bytes
/usr/bin/maskFastaFromBed	text/x-shellscript	root:root	0o755	42 bytes
/usr/bin/mergeBed	text/x-shellscript	root:root	0o755	38 bytes
/usr/bin/multiBamCov	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/multiIntersectBed	text/x-shellscript	root:root	0o755	43 bytes
/usr/bin/nucBed	text/x-shellscript	root:root	0o755	36 bytes
/usr/bin/pairToBed	text/x-shellscript	root:root	0o755	42 bytes
/usr/bin/pairToPair	text/x-shellscript	root:root	0o755	43 bytes
/usr/bin/randomBed	text/x-shellscript	root:root	0o755	39 bytes
/usr/bin/shuffleBed	text/x-shellscript	root:root	0o755	40 bytes
/usr/bin/slopBed	text/x-shellscript	root:root	0o755	37 bytes
/usr/bin/sortBed	text/x-shellscript	root:root	0o755	37 bytes
/usr/bin/subtractBed	text/x-shellscript	root:root	0o755	41 bytes
/usr/bin/tagBam	text/x-shellscript	root:root	0o755	36 bytes
/usr/bin/unionBedGraphs	text/x-shellscript	root:root	0o755	42 bytes
/usr/bin/windowBed	text/x-shellscript	root:root	0o755	39 bytes
/usr/bin/windowMaker	text/x-shellscript	root:root	0o755	44 bytes
/usr/share/		root:root	0o755
/usr/share/bedtools/		root:root	0o755
/usr/share/bedtools/genomes/		root:root	0o755
/usr/share/bedtools/genomes/human.hg18.genome	text/plain	root:root	0o755	856 bytes
/usr/share/bedtools/genomes/human.hg19.genome	text/plain	root:root	0o755	1.9 KB
/usr/share/bedtools/genomes/mouse.mm8.genome	text/plain	root:root	0o755	565 bytes
/usr/share/bedtools/genomes/mouse.mm9.genome	text/plain	root:root	0o755	585 bytes
/usr/share/bedtools/test/		root:root	0o755
/usr/share/bedtools/test/bamtobed/		root:root	0o755
/usr/share/bedtools/test/bamtobed/one_block.sam	text/plain	root:root	0o644	162 bytes
/usr/share/bedtools/test/bamtobed/test-bamtobed.sh	text/plain	root:root	0o644	3.2 KB
/usr/share/bedtools/test/bamtobed/three_blocks.sam	text/plain	root:root	0o644	176 bytes
/usr/share/bedtools/test/bamtobed/two_blocks.sam	text/plain	root:root	0o644	167 bytes
/usr/share/bedtools/test/bed12tobed6/		root:root	0o755
/usr/share/bedtools/test/bed12tobed6/bed6.bed	text/plain	root:root	0o644	18 bytes
/usr/share/bedtools/test/bed12tobed6/one_blocks.bed	text/plain	root:root	0o644	46 bytes
/usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh	text/plain	root:root	0o644	1.9 KB
/usr/share/bedtools/test/bed12tobed6/three_blocks.bed	text/plain	root:root	0o644	60 bytes
/usr/share/bedtools/test/bed12tobed6/two_blocks.bed	text/plain	root:root	0o644	52 bytes
/usr/share/bedtools/test/closest/		root:root	0o755
/usr/share/bedtools/test/closest/a.bed	text/plain	root:root	0o644	11 bytes
/usr/share/bedtools/test/closest/a.names.bed	text/plain	root:root	0o644	35 bytes
/usr/share/bedtools/test/closest/b.bed	text/plain	root:root	0o644	11 bytes
/usr/share/bedtools/test/closest/b.names.bed	text/plain	root:root	0o644	36 bytes
/usr/share/bedtools/test/closest/b-one-bp-closer.bed	text/plain	root:root	0o644	11 bytes
/usr/share/bedtools/test/closest/test-closest.sh	text/plain	root:root	0o644	2.1 KB
/usr/share/bedtools/test/cluster/		root:root	0o755
/usr/share/bedtools/test/cluster/in.bed	text/plain	root:root	0o644	264 bytes
/usr/share/bedtools/test/cluster/test-cluster.sh	text/plain	root:root	0o644	1.4 KB
/usr/share/bedtools/test/coverage/		root:root	0o755
/usr/share/bedtools/test/coverage/one_block.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/coverage/one_block.sam	text/plain	root:root	0o644	156 bytes
/usr/share/bedtools/test/coverage/sam-w-del.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/coverage/sam-w-del.sam	text/plain	root:root	0o644	142 bytes
/usr/share/bedtools/test/coverage/test-coverage.sh	text/plain	root:root	0o644	988 bytes
/usr/share/bedtools/test/coverage/three_blocks.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/coverage/three_blocks_match.bed	text/plain	root:root	0o644	60 bytes
/usr/share/bedtools/test/coverage/three_blocks_nomatch.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/coverage/three_blocks.sam	text/plain	root:root	0o644	171 bytes
/usr/share/bedtools/test/coverage/two_blocks.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/coverage/two_blocks.sam	text/plain	root:root	0o644	162 bytes
/usr/share/bedtools/test/expand/		root:root	0o755
/usr/share/bedtools/test/expand/expand.txt	text/plain	root:root	0o644	52 bytes
/usr/share/bedtools/test/expand/test-expand.sh	text/plain	root:root	0o644	1.2 KB
/usr/share/bedtools/test/flank/		root:root	0o755
/usr/share/bedtools/test/flank/a.bed	text/plain	root:root	0o644	41 bytes
/usr/share/bedtools/test/flank/test-flank.sh	text/plain	root:root	0o644	3.8 KB
/usr/share/bedtools/test/flank/tiny.genome	text/plain	root:root	0o644	10 bytes
/usr/share/bedtools/test/general/		root:root	0o755
/usr/share/bedtools/test/general/test-general.sh	text/plain	root:root	0o644	1.9 KB
/usr/share/bedtools/test/genomecov/		root:root	0o755
/usr/share/bedtools/test/genomecov/one_block.sam	text/plain	root:root	0o644	156 bytes
/usr/share/bedtools/test/genomecov/sam-w-del.sam	text/plain	root:root	0o644	142 bytes
/usr/share/bedtools/test/genomecov/test-genomecov.sh	text/plain	root:root	0o644	3.3 KB
/usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/genomecov/three_blocks_match.bed	text/plain	root:root	0o644	60 bytes
/usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/genomecov/three_blocks.sam	text/plain	root:root	0o644	171 bytes
/usr/share/bedtools/test/genomecov/two_blocks.sam	text/plain	root:root	0o644	162 bytes
/usr/share/bedtools/test/getfasta/		root:root	0o755
/usr/share/bedtools/test/getfasta/blocks.bed	text/plain	root:root	0o644	117 bytes
/usr/share/bedtools/test/getfasta/t.bed	application/x-empty	root:root	0o644	0 bytes
/usr/share/bedtools/test/getfasta/test-getfasta.sh	text/plain	root:root	0o644	1.2 KB
/usr/share/bedtools/test/getfasta/t.fa	text/plain	root:root	0o644	61 bytes
/usr/share/bedtools/test/getfasta/t.fa.fai	text/plain	root:root	0o644	16 bytes
/usr/share/bedtools/test/groupBy/		root:root	0o755
/usr/share/bedtools/test/groupBy/test-groupby.sh	text/plain	root:root	0o644	885 bytes
/usr/share/bedtools/test/groupBy/values3.header.bed	text/plain	root:root	0o644	250 bytes
/usr/share/bedtools/test/intersect/		root:root	0o755
/usr/share/bedtools/test/intersect/a.bed	text/plain	root:root	0o644	38 bytes
/usr/share/bedtools/test/intersect/b.bed	text/plain	root:root	0o644	76 bytes
/usr/share/bedtools/test/intersect/c.bed	text/plain	root:root	0o644	18 bytes
/usr/share/bedtools/test/intersect/mapped_and_unmapped.sam	text/plain	root:root	0o644	255 bytes
/usr/share/bedtools/test/intersect/one_block.sam	text/plain	root:root	0o644	162 bytes
/usr/share/bedtools/test/intersect/test-intersect.sh	text/plain	root:root	0o644	9.9 KB
/usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/intersect/three_blocks_match.bed	text/plain	root:root	0o644	60 bytes
/usr/share/bedtools/test/intersect/three_blocks_nomatch.bed	text/plain	root:root	0o644	63 bytes
/usr/share/bedtools/test/intersect/three_blocks.sam	text/plain	root:root	0o644	176 bytes
/usr/share/bedtools/test/intersect/two_blocks.sam	text/plain	root:root	0o644	167 bytes
/usr/share/bedtools/test/jaccard/		root:root	0o755
/usr/share/bedtools/test/jaccard/a.bed	text/plain	root:root	0o644	38 bytes
/usr/share/bedtools/test/jaccard/b.bed	text/plain	root:root	0o644	77 bytes
/usr/share/bedtools/test/jaccard/c.bed	text/plain	root:root	0o644	18 bytes
/usr/share/bedtools/test/jaccard/d.bed	text/plain	root:root	0o644	11 bytes
/usr/share/bedtools/test/jaccard/test-jaccard.sh	text/plain	root:root	0o644	825 bytes
/usr/share/bedtools/test/map/		root:root	0o755
/usr/share/bedtools/test/map/ivls.bed	text/plain	root:root	0o644	72 bytes
/usr/share/bedtools/test/map/test-map.sh	text/plain	root:root	0o644	2.7 KB
/usr/share/bedtools/test/map/values2.bed	text/plain	root:root	0o644	186 bytes
/usr/share/bedtools/test/map/values3.bed	text/plain	root:root	0o644	227 bytes
/usr/share/bedtools/test/map/values.bed	text/plain	root:root	0o644	147 bytes
/usr/share/bedtools/test/merge/		root:root	0o755
/usr/share/bedtools/test/merge/a.bed	text/plain	root:root	0o644	46 bytes
/usr/share/bedtools/test/merge/a.full.bed	text/plain	root:root	0o644	147 bytes
/usr/share/bedtools/test/merge/a.names.bed	text/plain	root:root	0o644	57 bytes
/usr/share/bedtools/test/merge/test-merge.sh	text/plain	root:root	0o644	3.6 KB
/usr/share/bedtools/test/multicov/		root:root	0o755
/usr/share/bedtools/test/multicov/multicov.bed	text/plain	root:root	0o644	72 bytes
/usr/share/bedtools/test/multicov/one_block.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/multicov/one_block.sam	text/plain	root:root	0o644	162 bytes
/usr/share/bedtools/test/multicov/test-multicov.sh	text/plain	root:root	0o644	3.7 KB
/usr/share/bedtools/test/multicov/two_blocks.bam.bai	application/octet-stream	root:root	0o644	96 bytes
/usr/share/bedtools/test/multicov/two_blocks.sam	text/plain	root:root	0o644	167 bytes
/usr/share/bedtools/test/slop/		root:root	0o755
/usr/share/bedtools/test/slop/a.bed	text/plain	root:root	0o644	41 bytes
/usr/share/bedtools/test/slop/test-slop.sh	text/plain	root:root	0o644	3.5 KB
/usr/share/bedtools/test/slop/tiny.genome	text/plain	root:root	0o644	10 bytes
/usr/share/bedtools/test/subtract/		root:root	0o755
/usr/share/bedtools/test/subtract/a.bed	text/plain	root:root	0o644	36 bytes
/usr/share/bedtools/test/subtract/b.bed	text/plain	root:root	0o644	36 bytes
/usr/share/bedtools/test/subtract/test-subtract.sh	text/plain	root:root	0o644	2.5 KB
/usr/share/bedtools/test/test.sh	text/plain	root:root	0o644	1.2 KB
/usr/share/doc/		root:root	0o755
/usr/share/doc/bedtools/		root:root	0o755
/usr/share/doc/bedtools/changelog.Debian.gz	application/gzip	root:root	0o644	903 bytes
/usr/share/doc/bedtools/copyright	text/plain	root:root	0o644	5.3 KB
/usr/share/doc/bedtools/README.rst	text/plain	root:root	0o644	1.5 KB