/usr/lib/emboss/include/ajacd.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 | #ifdef __cplusplus
extern "C"
{
#endif
#ifndef ajacd_h
#define ajacd_h
#include "ajax.h"
/*
** Prototype definitions
*/
void ajAcdGraphicsInit(const char *pgm,
ajint argc, char * const argv[]);
void ajAcdGraphicsInitPV(const char *pgm,
ajint argc,char * const argv[],
const char *package,
const char *packversion);
void ajAcdExit (AjBool single);
AjPAlign ajAcdGetAlign (const char *token);
AjPFloat ajAcdGetArray (const char *token);
AjBool ajAcdGetBoolean (const char *token);
AjPCod ajAcdGetCodon (const char *token);
AjPFile ajAcdGetCpdb (const char *token);
AjPFile ajAcdGetDatafile (const char *token);
AjPDir ajAcdGetDirectory (const char *token);
AjPStr ajAcdGetDirectoryName (const char *token);
AjPList ajAcdGetDirlist (const char *token);
AjPPhyloState* ajAcdGetDiscretestates (const char *token);
AjPPhyloState ajAcdGetDiscretestatesSingle (const char *token);
AjPPhyloDist* ajAcdGetDistances (const char *token);
AjPPhyloDist ajAcdGetDistancesSingle (const char *token);
double ajAcdGetFloatDouble (const char *token);
AjPFeattable ajAcdGetFeatures (const char *token);
AjPFeattabOut ajAcdGetFeatout (const char *token);
AjPList ajAcdGetFilelist (const char *token);
float ajAcdGetFloat (const char *token);
AjPPhyloFreq ajAcdGetFrequencies (const char *token);
AjPGraph ajAcdGetGraph (const char *token);
AjPGraph ajAcdGetGraphxy (const char *token);
AjPFile ajAcdGetInfile (const char *token);
ajint ajAcdGetInt (const char *token);
ajlong ajAcdGetIntLong (const char *token);
AjPStr* ajAcdGetList (const char *token);
AjPStr ajAcdGetListSingle(const char *token);
AjPMatrix ajAcdGetMatrix (const char *token);
AjPMatrixf ajAcdGetMatrixf (const char *token);
AjPOutfile ajAcdGetOutcodon(const char *token);
AjPOutfile ajAcdGetOutcpdb(const char *token);
AjPOutfile ajAcdGetOutdata(const char *token);
AjPDirout ajAcdGetOutdir (const char *token);
AjPStr ajAcdGetOutdirName (const char *token);
AjPOutfile ajAcdGetOutdiscrete(const char *token);
AjPOutfile ajAcdGetOutdistance(const char *token);
AjPFile ajAcdGetOutfile (const char *token);
AjPStr ajAcdGetOutfileName (const char *token);
AjPOutfile ajAcdGetOutfreq(const char *token);
AjPOutfile ajAcdGetOutmatrix(const char *token);
AjPOutfile ajAcdGetOutmatrixf(const char *token);
AjPOutfile ajAcdGetOutproperties(const char *token);
AjPOutfile ajAcdGetOutscop(const char *token);
AjPOutfile ajAcdGetOuttree(const char *token);
AjPPatlistSeq ajAcdGetPattern (const char *token);
AjPPhyloProp ajAcdGetProperties (const char *token);
AjPRange ajAcdGetRange (const char *token);
AjPPatlistRegex ajAcdGetRegexp (const char *token);
AjPRegexp ajAcdGetRegexpSingle (const char *token);
AjPReport ajAcdGetReport (const char *token);
AjPFile ajAcdGetScop (const char *token);
AjPStr* ajAcdGetSelect (const char *token);
AjPStr ajAcdGetSelectSingle (const char *token);
AjPSeq ajAcdGetSeq (const char *token);
AjPSeqall ajAcdGetSeqall (const char *token);
AjPSeqout ajAcdGetSeqout (const char *token);
AjPSeqout ajAcdGetSeqoutall (const char *token);
AjPSeqout ajAcdGetSeqoutset (const char *token);
AjPSeqset ajAcdGetSeqset (const char *token);
AjPSeqset* ajAcdGetSeqsetall (const char *token);
AjPSeqset ajAcdGetSeqsetallSingle (const char *token);
AjPStr ajAcdGetString (const char *token);
AjBool ajAcdGetToggle (const char *token);
AjPPhyloTree* ajAcdGetTree (const char *token);
AjPPhyloTree ajAcdGetTreeSingle (const char *token);
const AjPStr ajAcdGetValue (const char* token);
const AjPStr ajAcdGetValueDefault (const char* token);
void ajAcdInit(const char *pgm, ajint argc, char * const argv[]);
void ajAcdInitPV(const char *pgm, ajint argc, char * const argv[],
const char *package, const char *packversion);
AjBool ajAcdIsUserdefinedC(const char* token);
AjBool ajAcdIsUserdefinedS(const AjPStr);
const AjPStr ajAcdGetpathC(const char *token);
const AjPStr ajAcdGetpathS(const AjPStr);
void ajAcdPrintAppl(AjPFile outf, AjBool full);
void ajAcdPrintQual(AjPFile outf, AjBool full);
void ajAcdPrintType (AjPFile outf, AjBool full);
AjBool ajAcdSetControl (const char* optionName);
void ajAcdUnused(void);
__deprecated AjBool ajAcdIsUserdefined(const char* token);
__deprecated AjBool ajAcdDebug (void);
__deprecated AjBool ajAcdDebugIsSet (void);
__deprecated AjBool ajAcdFilter (void);
__deprecated AjPPhyloState ajAcdGetDiscretestatesI (const char *token,
ajint num);
__deprecated AjPStr ajAcdGetListI (const char *token, ajint num);
__deprecated AjPStr ajAcdGetSelectI (const char *token, ajint num);
__deprecated AjPSeqset ajAcdGetSeqsetallI (const char *token, ajint num);
__deprecated AjPPhyloTree ajAcdGetTreeI (const char *token, ajint num);
__deprecated const AjPStr ajAcdValue (const char* token);
__deprecated AjBool ajAcdStdout (void);
__deprecated AjBool ajAcdGetBool (const char *token);
__deprecated AjPFeattable ajAcdGetFeat (const char *token);
__deprecated void ajGraphicsInit(const char *pgm,
ajint argc, char * const argv[]);
__deprecated void ajGraphicsInitPV(const char *pgm,
ajint argc,char * const argv[],
const char *package,
const char *packversion);
/*
** End of prototype definitions
*/
#endif
#ifdef __cplusplus
}
#endif
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