/usr/share/doc/phylip/examples/tests/neighbor.version-3.5.x is in phylip 1:3.696+dfsg-5.
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Neighbor-Joining/UPGMA method version 3.5
Settings for this run:
N Neighbor-joining or UPGMA tree? Neighbor-joining
O Outgroup root? No, use as outgroup species 1
L Lower-triangular data matrix? No
R Upper-triangular data matrix? No
S Subreplicates? No
J Randomize input order of species? No. Use input order
M Analyze multiple data sets? No
0 Terminal type (IBM PC, VT52, ANSI)? ANSI
1 Print out the data at start of run No
2 Print indications of progress of run Yes
3 Print out tree Yes
4 Write out trees onto tree file? Yes
Are these settings correct? (type Y or the letter for one to change)
Neighbor-Joining/UPGMA method version 3.5
Settings for this run:
N Neighbor-joining or UPGMA tree? Neighbor-joining
O Outgroup root? No, use as outgroup species 1
L Lower-triangular data matrix? No
R Upper-triangular data matrix? No
S Subreplicates? No
J Randomize input order of species? No. Use input order
M Analyze multiple data sets? No
0 Terminal type (IBM PC, VT52, ANSI)? (none
1 Print out the data at start of run No
2 Print indications of progress of run Yes
3 Print out tree Yes
4 Write out trees onto tree file? Yes
Are these settings correct? (type Y or the letter for one to change)
CYCLE 4: OTU 1 ( 0.66204) JOINS OTU 2 ( 0.57646)
CYCLE 3: OTU 6 ( 0.14924) JOINS OTU 7 ( 0.10776)
CYCLE 2: OTU 5 ( 0.12276) JOINS NODE 6 ( 0.04809)
CYCLE 1: NODE 1 ( 0.30172) JOINS OTU 3 ( 0.31418)
LAST CYCLE:
NODE 1 ( 0.03714) JOINS OTU 4 ( 0.21738) JOINS NODE 5 ( 0.03822)
Output written on output file
Tree written on tree file
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