/usr/share/doc/libmstoolkit-dev/copyright

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: libmstoolkit
Source: https://github.com/mhoopmann/mstoolkit

License: Apache
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Licensed under the Apache License, Version 2.0 (the "License"); you
may not use this file except in compliance with the License. You may
obtain a copy of the License at
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http://www.apache.org/licenses/LICENSE-2.0
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Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
implied. See the License for the specific language governing
permissions and limitations under the License.

License: Artistic
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Copyright (c) 2000-2006, The Perl Foundation.
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Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.
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Preamble
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This license establishes the terms under which a given free software
Package may be copied, modified, distributed, and/or
redistributed. The intent is that the Copyright Holder maintains some
artistic control over the development of that Package while still
keeping the Package available as open source and free software.
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You are always permitted to make arrangements wholly outside of this
license directly with the Copyright Holder of a given Package. If the
terms of this license do not permit the full use that you propose to
make of the Package, you should contact the Copyright Holder and seek
a different licensing arrangement.
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Definitions
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"Copyright Holder" means the individual(s) or organization(s) named
in the copyright notice for the entire Package.
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"Contributor" means any party that has contributed code or other
material to the Package, in accordance with the Copyright Holder's
procedures.
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"You" and "your" means any person who would like to copy, distribute,
or modify the Package.
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"Package" means the collection of files distributed by the Copyright
Holder, and derivatives of that collection and/or of those files. A
given Package may consist of either the Standard Version, or a
Modified Version.
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"Distribute" means providing a copy of the Package or making it
accessible to anyone else, or in the case of a company or
organization, to others outside of your company or organization.
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"Distributor Fee" means any fee that you charge for Distributing this
Package or providing support for this Package to another party. It
does not mean licensing fees.
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"Standard Version" refers to the Package if it has not been modified,
or has been modified only in ways explicitly requested by the
Copyright Holder.
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"Modified Version" means the Package, if it has been changed, and
such changes were not explicitly requested by the Copyright Holder.
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"Original License" means this Artistic License as Distributed with
the Standard Version of the Package, in its current version or as it
may be modified by The Perl Foundation in the future.
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"Source" form means the source code, documentation source, and
configuration files for the Package.
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"Compiled" form means the compiled bytecode, object code, binary, or
any other form resulting from mechanical transformation or
translation of the Source form.
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Permission for Use and Modification Without Distribution
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(1) You are permitted to use the Standard Version and create and use
Modified Versions for any purpose without restriction, provided that
you do not Distribute the Modified Version.
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Permissions for Redistribution of the Standard Version
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(2) You may Distribute verbatim copies of the Source form of the
Standard Version of this Package in any medium without restriction,
either gratis or for a Distributor Fee, provided that you duplicate
all of the original copyright notices and associated disclaimers. At
your discretion, such verbatim copies may or may not include a
Compiled form of the Package.
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(3) You may apply any bug fixes, portability changes, and other
modifications made available from the Copyright Holder. The resulting
Package will still be considered the Standard Version, and as such
will be subject to the Original License.
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Distribution of Modified Versions of the Package as Source
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(4) You may Distribute your Modified Version as Source (either gratis
or for a Distributor Fee, and with or without a Compiled form of the
Modified Version) provided that you clearly document how it differs
from the Standard Version, including, but not limited to, documenting
any non-standard features, executables, or modules, and provided that
you do at least ONE of the following:
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(a) make the Modified Version available to the Copyright Holder of
the Standard Version, under the Original License, so that the
Copyright Holder may include your modifications in the Standard
Version.
(b) ensure that installation of your Modified Version does not
prevent the user installing or running the Standard Version. In
addition, the Modified Version must bear a name that is different
from the name of the Standard Version.
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(c) allow anyone who receives a copy of the Modified Version to make
the Source form of the Modified Version available to others under
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(i) the Original License or
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(ii) a license that permits the licensee to freely copy, modify and
redistribute the Modified Version using the same licensing terms that
apply to the copy that the licensee received, and requires that the
Source form of the Modified Version, and of any works derived from
it, be made freely available in that license fees are prohibited but
Distributor Fees are allowed.
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Distribution of Compiled Forms of the Standard Version or Modified
Versions without the Source
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(5) You may Distribute Compiled forms of the Standard Version without
the Source, provided that you include complete instructions on how to
get the Source of the Standard Version. Such instructions must be
valid at the time of your distribution. If these instructions, at any
time while you are carrying out such distribution, become invalid,
you must provide new instructions on demand or cease further
distribution. If you provide valid instructions or cease distribution
within thirty days after you become aware that the instructions are
invalid, then you do not forfeit any of your rights under this
license.
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(6) You may Distribute a Modified Version in Compiled form without
the Source, provided that you comply with Section 4 with respect to
the Source of the Modified Version. Aggregating or Linking the
Package
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(7) You may aggregate the Package (either the Standard Version or
Modified Version) with other packages and Distribute the resulting
aggregation provided that you do not charge a licensing fee for the
Package. Distributor Fees are permitted, and licensing fees for other
components in the aggregation are permitted. The terms of this
license apply to the use and Distribution of the Standard or Modified
Versions as included in the aggregation.
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(8) You are permitted to link Modified and Standard Versions with
other works, to embed the Package in a larger work of your own, or to
build stand-alone binary or bytecode versions of applications that
include the Package, and Distribute the result without restriction,
provided the result does not expose a direct interface to the
Package.
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Items That are Not Considered Part of a Modified Version
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(9) Works (including, but not limited to, modules and scripts) that
merely extend or make use of the Package, do not, by themselves,
cause the Package to be a Modified Version. In addition, such works
are not considered parts of the Package itself, and are not subject
to the terms of this license. General Provisions
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(10) Any use, modification, and distribution of the Standard or
Modified Versions is governed by this Artistic License. By using,
modifying or distributing the Package, you accept this license. Do
not use, modify, or distribute the Package, if you do not accept this
license.
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(11) If your Modified Version has been derived from a Modified
Version made by someone other than you, you are nevertheless required
to ensure that your Modified Version complies with the requirements
of this license.
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(12) This license does not grant you the right to use any trademark,
service mark, tradename, or logo of the Copyright Holder.
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(13) This license includes the non-exclusive, worldwide,
free-of-charge patent license to make, have made, use, offer to sell,
sell, import and otherwise transfer the Package with respect to any
patent claims licensable by the Copyright Holder that are necessarily
infringed by the Package. If you institute patent litigation
(including a cross-claim or counterclaim) against any party alleging
that the Package constitutes direct or contributory patent
infringement, then this Artistic License to you shall terminate on
the date that such litigation is filed.
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(14) Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT
HOLDER AND CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES. THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
PARTICULAR PURPOSE, OR NON-INFRINGEMENT ARE DISCLAIMED TO THE EXTENT
PERMITTED BY YOUR LOCAL LAW. UNLESS REQUIRED BY LAW, NO COPYRIGHT
HOLDER OR CONTRIBUTOR WILL BE LIABLE FOR ANY DIRECT, INDIRECT,
INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING IN ANY WAY OUT OF THE
USE OF THE PACKAGE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
DAMAGE.

License: BSD-3-Clause
.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
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1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
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3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY
WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.

License: GPL-3+
This package is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or (at
your option) any later version.
.
This package is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>
.
On Debian systems, the complete text of the GNU General Public
License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: Zlib
.
This software is provided 'as-is', without any express or implied
warranty. In no event will the authors be held liable for any
damages arising from the use of this software.
.
Permission is granted to anyone to use this software for any purpose,
including commercial applications, and to alter it and redistribute
it freely, subject to the following restrictions:
.
1. The origin of this software must not be misrepresented; you must
not claim that you wrote the original software. If you use this
software in a product, an acknowledgment in the product
documentation would be appreciated but is not required.
.
2. Altered source versions must be plainly marked as such, and must
not be misrepresented as being the original software.
.
3. This notice may not be removed or altered from any source
distribution.
.
Jean-loup Gailly Mark Adler
jloup@gzip.org madler@alumni.caltech.edu
.
The data format used by the zlib library is described by RFCs
(Request for Comments) 1950 to 1952 in the files
ftp://ds.internic.net/rfc/rfc1950.txt (zlib format), rfc1951.txt
(deflate format) and rfc1952.txt (gzip format).

Files: MSSingleScan/MSSingleScan.cpp
Copyright: 2011 Michael R. Hoopmann, Institute for Systems Biology
License: Apache

Files: src/MSToolkit/*
Copyright: 2005-2016 Michael R. Hoopmann
License: Apache

Files: src/mzParser/saxmzxmlhandler.cpp
Copyright: 2002 Pedrioli Patrick Institute for Systems Biology
2008 Ronald Beavis
2010 Mike Hoopmann Institute for Systems Biology
License: Artistic

files: src/mzParser/saxmzmlhandler.cpp
Copyright: 2002 Pedrioli Patrick Institute for Systems Biology
2005 Fredrik Levander, Brendan MacLean, Patrick Lacasse
2008 Ronald Beavis
2009 Fredrik Levander
2010 Mike Hoopmann Institute for Systems Biology
License: Artistic

Files: src/mzParser/saxhandler.cpp
Copyright: 2003-2004 Ronald C Beavis
License: Artistic

Files: src/mzParser/BasicSpectrum.cpp
Copyright: 2010-2012, Mike Hoopmann Institute for Systems Biology
License: Apache

Files: include/MSNumpress.hpp src/mzParser/MSNumpress.cpp
Copyright: 2013 Johan Teleman
License: Apache

Files: src/mzParser/BasicChromatogram.cpp src/mzParser/PWIZface.cpp src/mzParser/RAMPface.cpp src/mzParser/mz5handler.cpp src/mzParser/mzMLReader.cpp src/mzParser/mzpMz5Config.cpp src/mzParser/mzpMz5Structs.cpp
Copyright: 2011 Mike Hoopmann, Institute for Systems Biology
License: BSD-3-Clause

Files: src/mzParser/mzp_base64.cpp
Copyright: The Global Proteome Machine Organization
License: Artistic

Files: include/MSObject.h include/MSReader.h include/MSToolkitTypes.h include/RAWReader.h include/Spectrum.h include/mzMLWriter.h include/mzParser.h include/pepXMLWriter.h
Copyright: 2005-2016, Michael R. Hoopmann
License: Apache

Files: debian/*
Copyright: 2014 Filippo Rusconi <lopippo@debian.org>
License: GPL-3+

libmstoolkit-dev 82-6 / usr / share / doc / libmstoolkit-dev / copyright