libmstoolkit-dev 82-6 / usr / include / libmstoolkit / MSToolkitTypes.h

This file is indexed.

/usr/include/libmstoolkit/MSToolkitTypes.h is in libmstoolkit-dev 82-6.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
/*
Copyright 2005-2016, Michael R. Hoopmann

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
*/
#ifndef _MSTOOLKITTYPES_H
#define _MSTOOLKITTYPES_H

#include <stddef.h>

namespace MSToolkit {

enum MSSpectrumType {
  MS1,
  MS2,
  MS3,
  ZS,
  UZS,
  IonSpec,
  SRM,
  REFERENCE,
  Unspecified,
	MSX
};

enum MSFileFormat {
  bms1,
  bms2,
  cms1,
  cms2,
  mgf,
  ms1,
  ms2,
  msmat_ff,
  mzXML,
  mz5,
	mzML,
  raw,
  sqlite,
  psm,
  uzs,
  zs,
	mzXMLgz,
	mzMLgz,
  dunno
};

enum MSTag {
  no,
  D,
  H,
  I,
  S,
  Z
};

enum MSActivation {
  mstCID,
  mstECD,
  mstETD,
  mstETDSA,
  mstPQD,
  mstHCD,
	mstIRMPD,
  mstNA
};

struct MSHeader {
	char header[16][128];
};

struct MSScanInfo {
	int scanNumber[2];
	int numDataPoints;
  int numEZStates;
	int numZStates;
  float rTime;
  float IIT;
  float BPI;
  double* mz;
	int mzCount;
  double convA;
  double convB;
	double convC;
	double convD;
	double convE;
	double convI;
  double TIC;
  double BPM;
	MSScanInfo(){
    mz=NULL;
		scanNumber[0]=scanNumber[1]=0;
		numDataPoints=numEZStates=numZStates=0;
		rTime=IIT=BPI=0.0f;
		TIC=BPM=0.0;
		convA=convB=convC=convD=convE=convI=0.0;
    mzCount=0;
	}
	~MSScanInfo(){
		if(mz!=NULL) delete [] mz;
	}
};

struct DataPeak {
	double dMass;
	double dIntensity;
}; //For RAW files

struct Peak_T {
  double mz;
  float intensity;
};

struct ZState {
  int z;
  double mh;   //M+H, not mz
};

struct EZState {
  int z;
  double mh;      //M+H
  float pRTime;   //precursor area
  float pArea;    //precursor retention time
};

}

#endif

APT Browse - Built by Thomas Orozco.