libinsighttoolkit4-dev 4.12.2-dfsg1-1ubuntu1 / usr / include / ITK-4.12 / itkImageAlgorithm.hxx

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkImageAlgorithm_hxx
#define itkImageAlgorithm_hxx

#include "itkImageAlgorithm.h"
#include "itkArray.h"
#include "itkImageRegionIterator.h"
#include "itkImageScanlineIterator.h"


namespace itk
{

template<typename InputImageType, typename OutputImageType >
void ImageAlgorithm::DispatchedCopy( const InputImageType *inImage, OutputImageType *outImage,
                                     const typename InputImageType::RegionType &inRegion,
                                     const typename OutputImageType::RegionType &outRegion,
                                     FalseType )
{
  if ( inRegion.GetSize()[0] == outRegion.GetSize()[0] )
    {
    itk::ImageScanlineConstIterator<InputImageType> it( inImage, inRegion );
    itk::ImageScanlineIterator<OutputImageType> ot( outImage, outRegion );

    while( !it.IsAtEnd() )
      {
      while( !it.IsAtEndOfLine() )
        {
        ot.Set( static_cast< typename OutputImageType::PixelType >( it.Get() ) );
        ++ot;
        ++it;
        }
      ot.NextLine();
      it.NextLine();
      }
    return;
    }

  itk::ImageRegionConstIterator<InputImageType> it( inImage, inRegion );
  itk::ImageRegionIterator<OutputImageType> ot( outImage, outRegion );

  while( !it.IsAtEnd() )
    {
    ot.Set( static_cast< typename OutputImageType::PixelType >( it.Get() ) );
    ++ot;
    ++it;
    }
}

template<typename InputImageType, typename OutputImageType>
void ImageAlgorithm::DispatchedCopy( const InputImageType *inImage,
                                     OutputImageType *outImage,
                                     const typename InputImageType::RegionType &inRegion,
                                     const typename OutputImageType::RegionType &outRegion,
                                     TrueType )
{
  typedef typename InputImageType::RegionType _RegionType;
  typedef typename InputImageType::IndexType  _IndexType;

  // Get the number of bytes of each pixel in the buffer.
  const size_t NumberOfInternalComponents = ImageAlgorithm::PixelSize<InputImageType>::Get( inImage );

  // We wish to copy whole lines, otherwise just use the basic implementation.
  // Check that the number of internal components match
  if ( inRegion.GetSize()[0] != outRegion.GetSize()[0]
       || NumberOfInternalComponents != ImageAlgorithm::PixelSize<OutputImageType>::Get( outImage ) )
    {
    ImageAlgorithm::DispatchedCopy<InputImageType, OutputImageType>( inImage, outImage, inRegion, outRegion );
    return;
    }

  const typename InputImageType::InternalPixelType *in = inImage->GetBufferPointer();
  typename OutputImageType::InternalPixelType *out = outImage->GetBufferPointer();

  const _RegionType &inBufferedRegion = inImage->GetBufferedRegion();
  const _RegionType &outBufferedRegion = outImage->GetBufferedRegion();

  // Compute the number of continuous pixel which can be copied.
  size_t numberOfPixel = 1;
  unsigned int    movingDirection = 0;
  do
    {
    numberOfPixel *= inRegion.GetSize(movingDirection );
    ++movingDirection;
    }
  // The copy regions must extend to the full buffered region, to
  // ensure continuity of pixels between dimensions.
  while ( movingDirection < _RegionType::ImageDimension
          && inRegion.GetSize( movingDirection - 1 ) == inBufferedRegion.GetSize( movingDirection - 1 )
          && outRegion.GetSize( movingDirection - 1 ) == outBufferedRegion.GetSize( movingDirection - 1 )
          && inBufferedRegion.GetSize(movingDirection - 1) == outBufferedRegion.GetSize(movingDirection - 1) );

  const size_t sizeOfChunkInInternalComponents = numberOfPixel*NumberOfInternalComponents;

  _IndexType inCurrentIndex = inRegion.GetIndex();
  _IndexType outCurrentIndex = outRegion.GetIndex();

  while ( inRegion.IsInside( inCurrentIndex ) )
    {
    size_t inOffset = 0; // in pixels
    size_t outOffset = 0;

    size_t inSubDimensionQuantity = 1; // in pixels
    size_t outSubDimensionQuantity = 1;

    for (unsigned int i = 0; i < _RegionType::ImageDimension; ++i )
      {
      inOffset += inSubDimensionQuantity*static_cast<size_t>( inCurrentIndex[i] - inBufferedRegion.GetIndex(i) );
      inSubDimensionQuantity *= inBufferedRegion.GetSize(i);

      outOffset += outSubDimensionQuantity*static_cast<size_t>( outCurrentIndex[i] - outBufferedRegion.GetIndex(i) );
      outSubDimensionQuantity *= outBufferedRegion.GetSize(i);
      }

    const typename InputImageType::InternalPixelType* inBuffer = in + inOffset*NumberOfInternalComponents;
    typename OutputImageType::InternalPixelType* outBuffer = out + outOffset*NumberOfInternalComponents;

    CopyHelper(inBuffer,
              inBuffer+sizeOfChunkInInternalComponents ,
              outBuffer);

    if ( movingDirection == _RegionType::ImageDimension )
      {
      break;
      }

    // increment index to next chunk
    ++inCurrentIndex[movingDirection];
    for ( unsigned int i = movingDirection; i + 1 < _RegionType::ImageDimension; ++i )
      {
      // When reaching the end of the moving index in the copy region
      // dimension, carry to higher dimensions.
      if ( static_cast<SizeValueType>(inCurrentIndex[i]  - inRegion.GetIndex(i)) >= inRegion.GetSize(i) )
        {
        inCurrentIndex[i] = inRegion.GetIndex(i);
        ++inCurrentIndex[i + 1];
        }
      }

    // increment index to next chunk
    ++outCurrentIndex[movingDirection];
    for ( unsigned int i = movingDirection; i + 1 < _RegionType::ImageDimension; ++i )
      {
      if ( static_cast<SizeValueType>(outCurrentIndex[i]  - outRegion.GetIndex(i)) >= outRegion.GetSize(i) )
        {
        outCurrentIndex[i] = outRegion.GetIndex(i);
        ++outCurrentIndex[i + 1];
        }
      }

    }
}

template<typename InputImageType, typename OutputImageType>
typename OutputImageType::RegionType
ImageAlgorithm::EnlargeRegionOverBox(const typename InputImageType::RegionType & inputRegion,
                                     const InputImageType* inputImage,
                                     const OutputImageType* outputImage)
{
  typename OutputImageType::RegionType outputRegion;

  // Get the index of the corners of the input region,
  // map them to physical space, and convert them
  // to index for this image.
  // The region has 2^ImageDimension corners, each
  // of them either on the inferior or superior edge
  // along each dimension.
  unsigned int numberOfCorners = 1;
  for (unsigned int dim=0; dim < OutputImageType::ImageDimension; ++dim)
    {
    numberOfCorners *= 2;
    }
  typedef ContinuousIndex<double, OutputImageType::ImageDimension> ContinuousIndexType;
  std::vector<ContinuousIndexType> corners(numberOfCorners);

  for (unsigned int count=0; count < numberOfCorners; ++count)
    {
    ContinuousIndexType currentCornerIndex;
    currentCornerIndex.Fill(0);
    unsigned int localCount = count;

    // For each dimension, set the current index to either
    // the highest or lowest index along this dimension.
    // Since we need all the space covered by the input image to
    // be taken into account, including the half-pixel border,
    // we start half a pixel before index 0 and stop half a pixel
    // after size
    for (unsigned int dim=0; dim < OutputImageType::ImageDimension; ++dim)
      {
      if (localCount % 2)
        {
        currentCornerIndex[dim] = inputRegion.GetIndex(dim) + inputRegion.GetSize(dim) + 0.5;
        }
      else
        {
        currentCornerIndex[dim] = inputRegion.GetIndex(dim) - 0.5;
        }

      localCount /= 2;
      }

    typedef Point< SpacePrecisionType, OutputImageType::ImageDimension > PointType;
    PointType point;
    inputImage->TransformContinuousIndexToPhysicalPoint(currentCornerIndex, point);
    outputImage->TransformPhysicalPointToContinuousIndex(point, corners[count]);
    }

  // Compute a rectangular region from the vector of corner indexes
  for (unsigned int dim=0; dim < OutputImageType::ImageDimension; ++dim)
    {
    // Initialize index to the highest possible value
    outputRegion.SetIndex(dim, NumericTraits< IndexValueType >::max() );

    // For each dimension, set the output index to the minimum
    // of the corners' indexes, and the output size to their maximum
    for (unsigned int count=0; count < numberOfCorners; ++count)
      {
      IndexValueType continuousIndexFloor = Math::Floor<IndexValueType>( corners[count][dim] );
      if (continuousIndexFloor < outputRegion.GetIndex(dim))
        {
        outputRegion.SetIndex(dim, continuousIndexFloor);
        }
      IndexValueType continuousIndexCeil = Math::Ceil<IndexValueType>( corners[count][dim] );
      if (continuousIndexCeil > static_cast<IndexValueType>(outputRegion.GetSize(dim)))
        {
        outputRegion.SetSize(dim, continuousIndexCeil);
        }
      }

    // The size is actually the difference between maximum and minimum index,
    // so subtract the index
    outputRegion.SetSize(dim, outputRegion.GetSize(dim) - outputRegion.GetIndex(dim) );
    }

  // Make sure this region remains contained in the LargestPossibleRegion
  outputRegion.Crop(outputImage->GetLargestPossibleRegion());
  return outputRegion;
}

} // end namespace itk

#endif