iva 1.0.9+ds-4ubuntu1 in ubuntu - bionic / universe

About

This package is 8.2 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/i/iva/iva_1.0.9+ds-4ubuntu1_amd64.deb .

View its full control file here: debian/control.

Description

iterative virus sequence assembler

Relations

This package recommends: r-base-core, bioperl, trimmomatic.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

iva 1.0.9+ds-4ubuntu1 is in ubuntu - bionic / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 162 bytes
prerm text/x-shellscript N/A N/A 381 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/iva text/x-python root:root 0o755 16.8 KB
/usr/bin/iva_qc text/x-python root:root 0o755 6.1 KB
/usr/bin/iva_qc_make_db text/x-python root:root 0o755 2.3 KB
/usr/lib/ root:root 0o755
/usr/lib/python3/ root:root 0o755
/usr/lib/python3/dist-packages/ root:root 0o755
/usr/lib/python3/dist-packages/iva/ root:root 0o755
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/ root:root 0o755
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt application/octet-stream root:root 0o644 1 byte
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO text/plain root:root 0o644 483 bytes
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt application/x-empty root:root 0o644 0 bytes
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt text/plain root:root 0o644 4 bytes
/usr/lib/python3/dist-packages/iva/assembly.py text/x-c++ root:root 0o644 27.4 KB
/usr/lib/python3/dist-packages/iva/common.py text/x-c++ root:root 0o644 1.8 KB
/usr/lib/python3/dist-packages/iva/contig.py text/x-c++ root:root 0o644 1.9 KB
/usr/lib/python3/dist-packages/iva/contig_trim.py text/x-c++ root:root 0o644 4.3 KB
/usr/lib/python3/dist-packages/iva/edge.py text/x-c++ root:root 0o644 4.8 KB
/usr/lib/python3/dist-packages/iva/egg_extract.py text/x-c++ root:root 0o644 3.0 KB
/usr/lib/python3/dist-packages/iva/external_progs.py text/x-c++ root:root 0o644 4.0 KB
/usr/lib/python3/dist-packages/iva/gage/ root:root 0o755
/usr/lib/python3/dist-packages/iva/gage/colsum.pl text/x-perl root:root 0o755 80 bytes
/usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh text/x-shellscript root:root 0o755 1.7 KB
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class application/x-java-applet root:root 0o644 9.9 KB
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class application/x-java-applet root:root 0o644 489 bytes
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java text/x-java root:root 0o644 14.5 KB
/usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh text/x-shellscript root:root 0o755 1.4 KB
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$1.class application/x-java-applet root:root 0o644 196 bytes
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class application/x-java-applet root:root 0o644 13.5 KB
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java text/x-java root:root 0o644 18.7 KB
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class application/x-java-applet root:root 0o644 1.2 KB
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.class application/x-java-applet root:root 0o644 3.6 KB
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.java text/x-c root:root 0o644 3.5 KB
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class application/x-java-applet root:root 0o644 2.8 KB
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java text/x-c root:root 0o644 2.2 KB
/usr/lib/python3/dist-packages/iva/gage/Utils.class application/x-java-applet root:root 0o644 5.8 KB
/usr/lib/python3/dist-packages/iva/gage/Utils.java text/x-java root:root 0o644 9.0 KB
/usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class application/x-java-applet root:root 0o644 621 bytes
/usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class application/x-java-applet root:root 0o644 4.5 KB
/usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class application/x-java-applet root:root 0o644 1.2 KB
/usr/lib/python3/dist-packages/iva/graph.py text/x-c++ root:root 0o644 7.0 KB
/usr/lib/python3/dist-packages/iva/__init__.py text/x-python root:root 0o644 1.0 KB
/usr/lib/python3/dist-packages/iva/kcount.py text/x-c++ root:root 0o644 9.3 KB
/usr/lib/python3/dist-packages/iva/kmers.py text/x-c++ root:root 0o644 3.4 KB
/usr/lib/python3/dist-packages/iva/kraken.py text/x-c++ root:root 0o644 16.6 KB
/usr/lib/python3/dist-packages/iva/mapping.py text/x-c++ root:root 0o644 12.9 KB
/usr/lib/python3/dist-packages/iva/mummer.py text/x-c++ root:root 0o644 8.2 KB
/usr/lib/python3/dist-packages/iva/qc_external.py text/x-c++ root:root 0o644 8.0 KB
/usr/lib/python3/dist-packages/iva/qc.py text/x-c++ root:root 0o644 35.8 KB
/usr/lib/python3/dist-packages/iva/ratt/ root:root 0o755
/usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl text/x-perl root:root 0o755 1012 bytes
/usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl text/x-perl root:root 0o755 1.0 KB
/usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl text/x-perl root:root 0o755 41.0 KB
/usr/lib/python3/dist-packages/iva/ratt/ratt.config text/plain root:root 0o644 90 bytes
/usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv text/plain root:root 0o644 90 bytes
/usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm text/plain root:root 0o644 56.3 KB
/usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh text/x-shellscript root:root 0o755 12.9 KB
/usr/lib/python3/dist-packages/iva/read_trim/ root:root 0o755
/usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta text/plain root:root 0o644 3.1 KB
/usr/lib/python3/dist-packages/iva/read_trim.py text/x-python root:root 0o644 1.4 KB
/usr/lib/python3/dist-packages/iva/seed_processor.py text/x-c++ root:root 0o644 5.5 KB
/usr/lib/python3/dist-packages/iva/seed.py text/x-c++ root:root 0o644 5.9 KB
/usr/lib/python3/dist-packages/iva/test_data_runner.py text/x-c++ root:root 0o644 2.4 KB
/usr/lib/python3/dist-packages/iva/test_run_data/ root:root 0o755
/usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa text/plain root:root 0o644 672 bytes
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta text/plain root:root 0o644 9.7 KB
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta text/plain root:root 0o644 9.0 KB
/usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz application/gzip root:root 0o644 3.6 MB
/usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz application/gzip root:root 0o644 4.4 MB
/usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta text/plain root:root 0o644 9.0 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/iva/ root:root 0o755
/usr/share/doc/iva/changelog.Debian.gz application/gzip root:root 0o644 842 bytes
/usr/share/doc/iva/copyright text/plain root:root 0o644 1.5 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/iva.1.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/iva_qc.1.gz application/gzip root:root 0o644 1.2 KB
/usr/share/man/man1/iva_qc_make_db.1.gz application/gzip root:root 0o644 642 bytes

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