transdecoder 5.0.1-1 in ubuntu - bionic / universe

About

This package is 180.5 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/t/transdecoder/transdecoder_5.0.1-1_all.deb .

View its full control file here: debian/control.

Description

find coding regions within RNA transcript sequences

Relations

This package depends on: perl:any, liburi-perl, r-base-core, python.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

transdecoder 5.0.1-1 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/TransDecoder.LongOrfs root:root 0o777
/usr/bin/TransDecoder.Predict root:root 0o777
/usr/lib/ root:root 0o755
/usr/lib/transdecoder/ root:root 0o755
/usr/lib/transdecoder/PerlLib/ root:root 0o755
/usr/lib/transdecoder/PerlLib/DelimParser.pm text/x-perl root:root 0o644 5.3 KB
/usr/lib/transdecoder/PerlLib/Fasta_reader.pm text/x-perl root:root 0o755 3.4 KB
/usr/lib/transdecoder/PerlLib/Fasta_retriever.pm text/plain root:root 0o644 1.5 KB
/usr/lib/transdecoder/PerlLib/Gene_obj_indexer.pm text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/PerlLib/Gene_obj.pm text/x-perl root:root 0o755 139.4 KB
/usr/lib/transdecoder/PerlLib/GFF3_utils.pm text/x-perl root:root 0o644 8.2 KB
/usr/lib/transdecoder/PerlLib/Longest_orf.pm text/x-perl root:root 0o755 11.4 KB
/usr/lib/transdecoder/PerlLib/Nuc_translator.pm text/x-perl root:root 0o755 10.1 KB
/usr/lib/transdecoder/PerlLib/overlapping_nucs.ph text/x-perl root:root 0o755 1.1 KB
/usr/lib/transdecoder/PerlLib/Pipeliner.pm text/plain root:root 0o644 4.7 KB
/usr/lib/transdecoder/PerlLib/Process_cmd.pm text/plain root:root 0o644 485 bytes
/usr/lib/transdecoder/PerlLib/PWM.pm text/plain root:root 0o644 9.6 KB
/usr/lib/transdecoder/PerlLib/TiedHash.pm text/x-perl root:root 0o755 3.6 KB
/usr/lib/transdecoder/TransDecoder.LongOrfs text/x-perl root:root 0o755 10.4 KB
/usr/lib/transdecoder/TransDecoder.Predict text/x-perl root:root 0o755 13.4 KB
/usr/lib/transdecoder/util/ root:root 0o755
/usr/lib/transdecoder/util/bin/ root:root 0o755
/usr/lib/transdecoder/util/bin/.hidden application/x-empty root:root 0o644 0 bytes
/usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl text/x-perl root:root 0o755 11.3 KB
/usr/lib/transdecoder/util/compute_base_probs.pl text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/util/cufflinks_gtf_genome_to_cdna_fasta.pl text/x-perl root:root 0o755 2.5 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_alignment_gff3.pl text/x-perl root:root 0o755 2.1 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_bed.pl text/x-perl root:root 0o755 2.0 KB
/usr/lib/transdecoder/util/exclude_similar_proteins.pl text/x-perl root:root 0o755 3.4 KB
/usr/lib/transdecoder/util/extract_FL_subset.pl text/x-perl root:root 0o755 3.0 KB
/usr/lib/transdecoder/util/ffindex_resume.pl text/x-perl root:root 0o755 1012 bytes
/usr/lib/transdecoder/util/gene_list_to_gff.pl text/x-perl root:root 0o755 769 bytes
/usr/lib/transdecoder/util/get_FL_accs.pl text/x-perl root:root 0o755 646 bytes
/usr/lib/transdecoder/util/get_longest_ORF_per_transcript.pl text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl text/x-perl root:root 0o755 969 bytes
/usr/lib/transdecoder/util/gff3_file_to_bed.pl text/x-perl root:root 0o755 901 bytes
/usr/lib/transdecoder/util/gff3_file_to_proteins.pl text/x-perl root:root 0o755 4.4 KB
/usr/lib/transdecoder/util/index_gff3_files_by_isoform.pl text/x-perl root:root 0o755 2.0 KB
/usr/lib/transdecoder/util/misc/ root:root 0o755
/usr/lib/transdecoder/util/misc/get_FP_FN_scores.py text/x-python root:root 0o755 2.2 KB
/usr/lib/transdecoder/util/misc/__init__.py application/x-empty root:root 0o644 0 bytes
/usr/lib/transdecoder/util/misc/plot_indiv_seq_likelihood_profile.py text/x-python root:root 0o755 3.1 KB
/usr/lib/transdecoder/util/misc/rpart_scores.Rscript text/plain root:root 0o755 1.5 KB
/usr/lib/transdecoder/util/misc/select_TD_orfs.py text/x-python root:root 0o755 8.3 KB
/usr/lib/transdecoder/util/nr_ORFs_gff3.pl text/x-perl root:root 0o755 1.6 KB
/usr/lib/transdecoder/util/pfam_mpi.pbs text/x-shellscript root:root 0o755 950 bytes
/usr/lib/transdecoder/util/pfam_runner.pl text/x-perl root:root 0o755 9.0 KB
/usr/lib/transdecoder/util/PWM/ root:root 0o755
/usr/lib/transdecoder/util/PWM/build_atgPWM_+-.pl text/x-perl root:root 0o755 5.5 KB
/usr/lib/transdecoder/util/PWM/compute_AUC.pl text/x-perl root:root 0o755 2.9 KB
/usr/lib/transdecoder/util/PWM/deplete_feature_noise.pl text/x-perl root:root 0o755 5.2 KB
/usr/lib/transdecoder/util/PWM/__deprecated/ root:root 0o755
/usr/lib/transdecoder/util/PWM/__deprecated/build_atgPWM.pl text/x-perl root:root 0o755 3.9 KB
/usr/lib/transdecoder/util/PWM/__deprecated/build_pwm.pl text/x-perl root:root 0o755 1.1 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM_+-.pl text/x-perl root:root 0o755 3.9 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM.pl text/x-perl root:root 0o755 3.7 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM_+-.predict.pl text/x-perl root:root 0o755 5.6 KB
/usr/lib/transdecoder/util/PWM/__deprecated/score_atgPWM.pl text/x-perl root:root 0o755 2.8 KB
/usr/lib/transdecoder/util/PWM/feature_scores_to_ROC.pl text/x-perl root:root 0o755 2.3 KB
/usr/lib/transdecoder/util/PWM/feature_scoring.+-.pl text/x-perl root:root 0o755 6.0 KB
/usr/lib/transdecoder/util/PWM/make_seqLogo.Rscript text/plain root:root 0o755 403 bytes
/usr/lib/transdecoder/util/PWM/plot_ROC.Rscript text/plain root:root 0o755 437 bytes
/usr/lib/transdecoder/util/PWM/README.md text/plain root:root 0o644 2.1 KB
/usr/lib/transdecoder/util/PWM/simulate_feature_seq_from_PWM.pl text/x-perl root:root 0o755 980 bytes
/usr/lib/transdecoder/util/__pwm_tests/ root:root 0o755
/usr/lib/transdecoder/util/__pwm_tests/cleanMe.sh text/x-shellscript root:root 0o755 119 bytes
/usr/lib/transdecoder/util/__pwm_tests/longest_orfs.cds.top_longest_5000.nr80.gz application/gzip root:root 0o644 98.7 KB
/usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz root:root 0o777
/usr/lib/transdecoder/util/__pwm_tests/runMe.sh text/x-shellscript root:root 0o755 264 bytes
/usr/lib/transdecoder/util/refine_hexamer_scores.pl text/x-perl root:root 0o755 1.8 KB
/usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl text/x-perl root:root 0o755 2.5 KB
/usr/lib/transdecoder/util/score_CDS_likelihood_all_6_frames.pl text/x-perl root:root 0o755 3.1 KB
/usr/lib/transdecoder/util/select_best_ORFs_per_transcript.pl text/x-perl root:root 0o755 9.8 KB
/usr/lib/transdecoder/util/seq_n_baseprobs_to_loglikelihood_vals.pl text/x-perl root:root 0o755 3.8 KB
/usr/lib/transdecoder/util/start_codon_refinement.pl text/x-perl root:root 0o755 9.6 KB
/usr/lib/transdecoder/util/train_start_PWM.pl text/x-perl root:root 0o755 4.3 KB
/usr/lib/transdecoder/util/uri_unescape.pl text/x-perl root:root 0o755 116 bytes
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/transdecoder/ root:root 0o755
/usr/share/doc/transdecoder/changelog.Debian.gz application/gzip root:root 0o644 1.1 KB
/usr/share/doc/transdecoder/copyright text/plain root:root 0o644 1.8 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/TransDecoder.LongOrfs.1.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/TransDecoder.Predict.1.gz application/gzip root:root 0o644 2.7 KB

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