This package is 2.2 MB.
                It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-deseq2/r-bioc-deseq2_1.18.1-1_amd64.deb
.
                
            
                View its full control file here:
                debian/control.
            
R package for RNA-Seq Differential Expression Analysis
This package depends on:
                    r-base-core (>= 3.4.3-1build1), r-api-3.4, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.14), libgcc1 (>= 1:3.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2).
                
This package does not recommend any other package.
This package suggests:
                    r-cran-testthat, r-cran-knitr, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply.
                
This package does not conflict with any other package.
r-bioc-deseq2 1.18.1-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
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