/usr/lib/R/site-library/altcdfenvs/INDEX is in r-bioc-altcdfenvs 1:2.40.0-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | AffyProbesMatch-class Class "AffyProbesMatch"
CdfEnvAffy-class Class "CdfEnvAffy"
appendCdfEnvAffy append probe sets to a CdfEnvAffy
buildCdfEnv.biostrings
Build CDF environments
cdfenvEx CdfEnvAffy
copyCdfEnvAffy make a copy of a CdfEnvAffy
countduplicated Count the number of times probes are used
geneNames.CdfEnvAffy get the names of the known probe sets
getxy.probeseq A function to get the XY coordinates from a
probes sequences data frame
index2xy Functions to shuttle from indexes to XY
coordinates
indexProbes.CdfEnvAffy
indexes for probes
matchAffyProbes Match the probes on an Affymetrix array
plot.CdfEnvAffy A function to 'plot' a CdfEnvAffy
read.FASTA.entry Functions to work with FASTA files /
connections
removeIndex A function to remove probes in an environment
toHypergraph Transform to an hypergraph
unique.CdfEnvAffy Remove duplicated elements from a CdfEnvAffy
validAffyBatch Check validity of a CdfEnvAffy.
wrapCdfEnvAffy functions related to cdfenvs
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