| 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/brlens/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/brlens/brlens.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 4.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/brlens/trees-with-brlens.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 12.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/build/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/build/build-term-guards.lisp
    
        
    
 | text/plain | root:root | 0o644 | 19.6 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/build/build-term.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 8.2 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/fringes/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/fringes/fringes-guards.lisp
    
        
    
 | text/plain | root:root | 0o644 | 22.2 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/fringes/fringes-props.lisp
    
        
    
 | text/plain | root:root | 0o644 | 8.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/fringes/fringes.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 26.4 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/bdd-functions.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 23.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/extra.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 7.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/fast-lists.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/sets.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 20.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-helper/top.lisp
    
        
    
 | text/plain | root:root | 0o644 | 100 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/app-rev-lists.lisp
    
        
    
 | text/plain | root:root | 0o644 | 3.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/btrees-bdds-sets.lisp
    
        
    
 | text/plain | root:root | 0o644 | 3.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/btrees-bdds.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 3.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/btrees.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/sets-lists-trees.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 7.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/top.lisp
    
        
    
 | text/plain | root:root | 0o644 | 239 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/gen-trees/tree-predicates.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 21.4 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/replete/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/replete/replete-guards.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 7.9 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/replete/replete-helper.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 23.4 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/replete/replete.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 8.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/sequences/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/sequences/align.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 9.2 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/sequences/p-inform.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 3.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/sequences/seqs.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 4.1 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/insertion-based-sort.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 38.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/merge-based-sort.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 19.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/mv-root.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 8.6 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/quicksort.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 6.2 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/sort-help.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 9.4 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/code/tree-manip/top.lisp
    
        
    
 | text/plain | root:root | 0o644 | 118 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/db-from-list.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 1.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/db.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 30.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/entry.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 15.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/filters.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 27.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/database/props.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 7.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/fringes-taspi.acl2
    
        
    
 | text/plain | root:root | 0o644 | 70 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/fringes-taspi.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 33.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/omerge-good-order.acl2
    
        
    
 | text/plain | root:root | 0o644 | 61 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/omerge-good-order.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.6 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/sets.acl2
    
        
    
 | text/plain | root:root | 0o644 | 141 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/proofs/sets.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 9.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/consensus.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 9.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/greedy.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 5.4 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/mast.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 4.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/mct.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 3.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/multipolar-loose.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 15.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/top.lisp
    
        
    
 | text/plain | root:root | 0o644 | 214 bytes | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/tree-compat.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 7.1 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/sets-input/tree-support-in-set.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 16.3 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/single-input/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/single-input/taxa-based.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 26.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/single-input/tree-stats.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 6.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/taspi-xdoc.lisp
    
        
    
 | text/plain | root:root | 0o644 | 67.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-distance/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-distance/rf.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 6.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-distance/symm-diff.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 4.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/branch-and-bound/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/branch-and-bound/bandb.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 12.9 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/distance-based/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/distance-based/naive-quartet-method.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.9 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/heuristics/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/heuristics/do-search.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.6 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/heuristics/spr.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.9 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/heuristics/tbr.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 17.5 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/tree-gen-helper/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-generation/tree-gen-helper/basics.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 9.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/
    
        
    
 |  | root:root | 0o755 |  | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/ambig-score.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 5.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/circle-scoring.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 3.7 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/costs.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 8.2 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/efficient-pscores-help.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 2.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/efficient-pscores.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 13.0 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/fitch-scoring.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 11.6 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/min-length.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 32.8 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/opt-pairwise.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 2.1 KB | 
        
            
                | 
    
        
    
    
    /usr/share/acl2-8.0dfsg/books/projects/taspi/tree-score/pscores.lisp
    
        
    
 | text/x-lisp | root:root | 0o644 | 19.3 KB |