python3-rpy2 2.8.5-1 / usr / lib / python3 / dist-packages / rpy2 / robjects / lib / dplyr.py

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from collections import namedtuple
from six import with_metaclass
from rpy2.robjects.packages import (importr, data,
                                    Package, default_symbol_r2python,
                                    default_symbol_check_after,
                                    WeakPackage)
import warnings
    
with warnings.catch_warnings():
    warnings.simplefilter("ignore")
    dplyr = importr('dplyr', on_conflict="warn")
    lazyeval = importr('lazyeval', on_conflict="warn")
    dplyr = WeakPackage(dplyr._env,
                        dplyr.__rname__,
                        translation=dplyr._translation,
                        exported_names=dplyr._exported_names,
                        on_conflict="warn",
                        version=dplyr.__version__,
                        symbol_r2python=dplyr._symbol_r2python,
                        symbol_check_after=dplyr._symbol_check_after)
TARGET_VERSION = '0.4.3'
if dplyr.__version__ != TARGET_VERSION:
    warnings.warn('This was designed againt dplyr version %s but you have %s' % (TARGET_VERSION, dplyr.__version__))

    
from rpy2 import robjects

StringInEnv = namedtuple('StringInEnv', 'string env')

def _fix_args_inenv(args, env):
    args_inenv = list()
    for v in args:
        if isinstance(v, StringInEnv):
            args_inenv.append(lazyeval.as_lazy(v.string, env=v.env))
        else:
            args_inenv.append(lazyeval.as_lazy(v, env=env))
    return args_inenv

def _fix_kwargs_inenv(kwargs, env):
    kwargs_inenv = dict()
    for k,v in kwargs.items():
        if isinstance(v, StringInEnv):
            kwargs_inenv[k] = lazyeval.as_lazy(v.string, env=v.env)
        else:
            kwargs_inenv[k] = lazyeval.as_lazy(v, env=env)
    return kwargs_inenv

def _wrap(rfunc, cls, env=robjects.globalenv):
    def func(dataf, *args, **kwargs):
        args_inenv = _fix_args_inenv(args, env)
        kwargs_inenv = _fix_kwargs_inenv(kwargs, env)
        if cls is None:
            return type(dataf)(rfunc(dataf, *args_inenv, **kwargs_inenv))
        else:
            return cls(rfunc(dataf, *args_inenv, **kwargs_inenv))
    return func

def _wrap2(rfunc, cls, env=robjects.globalenv):
    def func(dataf_a, dataf_b, *args, **kwargs):
        args_inenv = _fix_args_inenv(args, env)
        kwargs_inenv = _fix_kwargs_inenv(kwargs, env)
        if cls is None:
            return type(dataf_a)(rfunc(dataf_a, dataf_b,
                                       *args_inenv, **kwargs_inenv))
        else:
            return cls(rfunc(dataf_a, dataf_b,
                             *args_inenv, **kwargs_inenv))
    return func

def _make_pipe(rfunc, cls, env=robjects.globalenv):
    def func(*args, **kwargs):
        def func2(obj):
            args_inenv = _fix_args_inenv(args, env)
            kwargs_inenv = _fix_kwargs_inenv(kwargs, env)
            return cls(rfunc(obj, *args_inenv, **kwargs_inenv))
        return func2
    return func

def _make_pipe2(rfunc, cls, env=robjects.globalenv):
    def func(*args, **kwargs):
        def func2(obj_a, obj_b):
            args_inenv = _fix_args_inenv(args, env)
            kwargs_inenv = _fix_kwargs_inenv(kwargs, env)
            return cls(rfunc(obj_a, obj_b, *args_inenv, **kwargs_inenv))
        return func2
    return func

class DataFrame(robjects.DataFrame):
    """ DataFrame object extending the object of the same name in
    `rpy2.robjects.vectors` with functionalities defined in the R
    package `dplyr`."""
    
    def __rshift__(self, other):
        return other(self)

    def copy_to(self, destination, name, **kwargs):
        """
        - destination: database
        - name: table name in the destination database
        """
        res = dplyr.copy_to(destination, self, name=name)
        return type(self)(res)

    def collapse(self, *args, **kwargs):
        """
        Call the function `collapse` in the R package `dplyr`.
        """
        
        cls = type(self)
        return cls(dplyr.collapse(self, *args, **kwargs))

    def collect(self, *args, **kwargs):
        """Call the function `collect` in the R package `dplyr`."""
        cls = type(self)
        return cls(dplyr.collect(self, *args, **kwargs))
        
class GroupedDataFrame(DataFrame):
    pass

DataFrame.arrange = _wrap(dplyr.arrange_, None)
DataFrame.distinct = _wrap(dplyr.distinct_, None)
DataFrame.mutate = _wrap(dplyr.mutate_, None)
DataFrame.transmute = _wrap(dplyr.transmute_, None)
DataFrame.filter = _wrap(dplyr.filter_, None)
DataFrame.select = _wrap(dplyr.select_, None)
DataFrame.group_by = _wrap(dplyr.group_by_, GroupedDataFrame)
DataFrame.distinct = _wrap(dplyr.distinct_, None)
DataFrame.inner_join = _wrap2(dplyr.inner_join, None)
DataFrame.left_join = _wrap2(dplyr.left_join, None)
DataFrame.right_join = _wrap2(dplyr.right_join, None)
DataFrame.full_join = _wrap2(dplyr.full_join, None)
DataFrame.semi_join = _wrap2(dplyr.semi_join, None)
DataFrame.anti_join = _wrap2(dplyr.anti_join, None)
DataFrame.union = _wrap2(dplyr.union, None)
DataFrame.intersect = _wrap2(dplyr.intersect, None)
DataFrame.setdiff = _wrap2(dplyr.setdiff, None)

DataFrame.sample_n = _wrap(dplyr.sample_n, None)
DataFrame.sample_frac = _wrap(dplyr.sample_frac, None)
DataFrame.slice = _wrap(dplyr.slice_, None)

DataFrame.count = _wrap(dplyr.count_, None)
DataFrame.tally = _wrap(dplyr.tally, None)

GroupedDataFrame.summarize = _wrap(dplyr.summarize_, DataFrame)
GroupedDataFrame.summarise = GroupedDataFrame.summarize
GroupedDataFrame.ungroup = _wrap(dplyr.ungroup, DataFrame)

arrange = _make_pipe(dplyr.arrange_, DataFrame)
count = _make_pipe(dplyr.count_, DataFrame)
distinct = _make_pipe(dplyr.distinct_, DataFrame)
mutate = _make_pipe(dplyr.mutate_, DataFrame)
transmute = _make_pipe(dplyr.transmute_, DataFrame)
filter = _make_pipe(dplyr.filter_, DataFrame)
select = _make_pipe(dplyr.select_, DataFrame)
group_by = _make_pipe(dplyr.group_by_, DataFrame)
summarize = _make_pipe(dplyr.summarize_, DataFrame)
summarise = summarize
distinct = _make_pipe(dplyr.distinct_, DataFrame)
inner_join = _make_pipe2(dplyr.inner_join, DataFrame)
left_join = _make_pipe2(dplyr.left_join, DataFrame)
right_join = _make_pipe2(dplyr.right_join, DataFrame)
full_join = _make_pipe2(dplyr.full_join, DataFrame)
semi_join = _make_pipe2(dplyr.semi_join, DataFrame)
anti_join = _make_pipe2(dplyr.anti_join, DataFrame)
union = _make_pipe2(dplyr.union, DataFrame)
intersect = _make_pipe2(dplyr.intersect, DataFrame)
setdiff = _make_pipe2(dplyr.setdiff, DataFrame)
sample_n = _make_pipe(dplyr.sample_n, DataFrame)
sample_frac = _make_pipe(dplyr.sample_frac, DataFrame)
slice = _make_pipe(dplyr.slice_, DataFrame)
tally = _make_pipe(dplyr.tally, DataFrame)

# family of functions 'src'
class DataSource(robjects.ListVector):
    """ Source of data tables (e.g., a schema in a relational database). """
    
    @property
    def tablenames(self):
        """ Call the R function dplyr::src_tbls() and return a vector
        of table names."""
        return tuple(dplyr.src_tbls(self))
    def get_table(self, name):
        """ "Get" table from a source (R dplyr's function `tbl`). """
        return DataFrame(tbl(self, name))
    
src = dplyr.src
src_desc = dplyr.src_desc
src_tbls = dplyr.src_tbls

src_local = dplyr.src_local
src_df = dplyr.src_df
src_dt = dplyr.src_dt

def src_sql(*args, **kwargs):
    res = dplyr.src_sql(*args, **kwargs)
    return DataSource(res)

def src_mysql(*args, **kwargs):
    res = dplyr.src_mysql(*args, **kwargs)
    return DataSource(res)

def src_postgres(*args, **kwargs):
    res = dplyr.src_postgres(*args, **kwargs)
    return DataSource(res)

def src_sqlite(*args, **kwargs):
    res = dplyr.src_sqlite(*args, **kwargs)
    return DataSource(res)

# family of functions 'tbl'

tbl = dplyr.tbl

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