/usr/lib/python2.7/dist-packages/numpy/ma/bench.py is in python-numpy 1:1.12.1-3.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 | #! /usr/bin/env python
from __future__ import division, print_function
import timeit
import numpy
###############################################################################
# Global variables #
###############################################################################
# Small arrays
xs = numpy.random.uniform(-1, 1, 6).reshape(2, 3)
ys = numpy.random.uniform(-1, 1, 6).reshape(2, 3)
zs = xs + 1j * ys
m1 = [[True, False, False], [False, False, True]]
m2 = [[True, False, True], [False, False, True]]
nmxs = numpy.ma.array(xs, mask=m1)
nmys = numpy.ma.array(ys, mask=m2)
nmzs = numpy.ma.array(zs, mask=m1)
# Big arrays
xl = numpy.random.uniform(-1, 1, 100*100).reshape(100, 100)
yl = numpy.random.uniform(-1, 1, 100*100).reshape(100, 100)
zl = xl + 1j * yl
maskx = xl > 0.8
masky = yl < -0.8
nmxl = numpy.ma.array(xl, mask=maskx)
nmyl = numpy.ma.array(yl, mask=masky)
nmzl = numpy.ma.array(zl, mask=maskx)
###############################################################################
# Functions #
###############################################################################
def timer(s, v='', nloop=500, nrep=3):
units = ["s", "ms", "µs", "ns"]
scaling = [1, 1e3, 1e6, 1e9]
print("%s : %-50s : " % (v, s), end=' ')
varnames = ["%ss,nm%ss,%sl,nm%sl" % tuple(x*4) for x in 'xyz']
setup = 'from __main__ import numpy, ma, %s' % ','.join(varnames)
Timer = timeit.Timer(stmt=s, setup=setup)
best = min(Timer.repeat(nrep, nloop)) / nloop
if best > 0.0:
order = min(-int(numpy.floor(numpy.log10(best)) // 3), 3)
else:
order = 3
print("%d loops, best of %d: %.*g %s per loop" % (nloop, nrep,
3,
best * scaling[order],
units[order]))
def compare_functions_1v(func, nloop=500,
xs=xs, nmxs=nmxs, xl=xl, nmxl=nmxl):
funcname = func.__name__
print("-"*50)
print("%s on small arrays" % funcname)
module, data = "numpy.ma", "nmxs"
timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
print("%s on large arrays" % funcname)
module, data = "numpy.ma", "nmxl"
timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
return
def compare_methods(methodname, args, vars='x', nloop=500, test=True,
xs=xs, nmxs=nmxs, xl=xl, nmxl=nmxl):
print("-"*50)
print("%s on small arrays" % methodname)
data, ver = "nm%ss" % vars, 'numpy.ma'
timer("%(data)s.%(methodname)s(%(args)s)" % locals(), v=ver, nloop=nloop)
print("%s on large arrays" % methodname)
data, ver = "nm%sl" % vars, 'numpy.ma'
timer("%(data)s.%(methodname)s(%(args)s)" % locals(), v=ver, nloop=nloop)
return
def compare_functions_2v(func, nloop=500, test=True,
xs=xs, nmxs=nmxs,
ys=ys, nmys=nmys,
xl=xl, nmxl=nmxl,
yl=yl, nmyl=nmyl):
funcname = func.__name__
print("-"*50)
print("%s on small arrays" % funcname)
module, data = "numpy.ma", "nmxs,nmys"
timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
print("%s on large arrays" % funcname)
module, data = "numpy.ma", "nmxl,nmyl"
timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
return
if __name__ == '__main__':
compare_functions_1v(numpy.sin)
compare_functions_1v(numpy.log)
compare_functions_1v(numpy.sqrt)
compare_functions_2v(numpy.multiply)
compare_functions_2v(numpy.divide)
compare_functions_2v(numpy.power)
compare_methods('ravel', '', nloop=1000)
compare_methods('conjugate', '', 'z', nloop=1000)
compare_methods('transpose', '', nloop=1000)
compare_methods('compressed', '', nloop=1000)
compare_methods('__getitem__', '0', nloop=1000)
compare_methods('__getitem__', '(0,0)', nloop=1000)
compare_methods('__getitem__', '[0,-1]', nloop=1000)
compare_methods('__setitem__', '0, 17', nloop=1000, test=False)
compare_methods('__setitem__', '(0,0), 17', nloop=1000, test=False)
print("-"*50)
print("__setitem__ on small arrays")
timer('nmxs.__setitem__((-1,0),numpy.ma.masked)', 'numpy.ma ', nloop=10000)
print("-"*50)
print("__setitem__ on large arrays")
timer('nmxl.__setitem__((-1,0),numpy.ma.masked)', 'numpy.ma ', nloop=10000)
print("-"*50)
print("where on small arrays")
timer('numpy.ma.where(nmxs>2,nmxs,nmys)', 'numpy.ma ', nloop=1000)
print("-"*50)
print("where on large arrays")
timer('numpy.ma.where(nmxl>2,nmxl,nmyl)', 'numpy.ma ', nloop=100)
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