/usr/include/ncbi-vdb/vdb/database.hpp is in libncbi-vdb-dev 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _hpp_vdb_database_
#define _hpp_vdb_database_
#ifndef _h_vdb_database_
#include <vdb/database.h>
#endif
#ifndef _h_vdb_table_
#include <vdb/table.h>
#endif
/*--------------------------------------------------------------------------
* VDatabase
* opaque connection to a database within file system
*/
struct VDatabase
{
/* AddRef
* Release
* all objects are reference counted
* NULL references are ignored
*/
inline rc_t AddRef () const throw ()
{ return VDatabaseAddRef ( this ); }
inline rc_t Release () const throw ()
{ return VDatabaseRelease ( this ); }
/* CreateDB
* create a new or open an existing database under parent database
*
* "db" [ OUT ] - return parameter for newly opened database
*
* "member" [ IN ] - name of database member template under parent
* the named member is a db template rather than a named database.
*
* "cmode" [ IN ] - creation mode
*
* "name" [ IN ] - NUL terminated string in
* db-native character set giving actual table name
*/
inline rc_t CreateDB ( VDatabase **db, const char *member,
KCreateMode cmode, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVCreateDB ( this, db, member, cmode, name, args );
va_end ( args );
return rc;
}
inline rc_t CreateDB ( VDatabase **db, const char *member,
KCreateMode cmode, const char *name, va_list args ) throw ()
{ return VDatabaseVCreateDB ( this, db, member, cmode, name, args ); }
/* OpenDBRead
* open a database for read under parent db
* OpenDBUpdate
* open or create a database for read/write under parent db
*
* "db" [ OUT ] - return parameter for newly opened database
*
* "name" [ IN ] - NUL terminated string in
* db-native character set giving name of database member
*/
inline rc_t OpenDB ( const VDatabase **db, const char *name, ... ) const throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVOpenDBRead ( this, db, name, args );
va_end ( args );
return rc;
}
inline rc_t OpenDB ( const VDatabase **db, const char *name, va_list args ) const throw ()
{ return VDatabaseVOpenDBRead ( this, db, name, args ); }
inline rc_t OpenDB ( VDatabase **db, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVOpenDBUpdate ( this, db, name, args );
va_end ( args );
return rc;
}
inline rc_t OpenDB ( VDatabase **db, const char *name, va_list args ) throw ()
{ return VDatabaseVOpenDBUpdate ( this, db, name, args ); }
/* CreateTable
* create a new or open an existing table under database
*
* "tbl" [ OUT ] - return parameter for newly opened table
*
* "member" [ IN ] - name of table member template under database
* the named member is a table template rather than a named table.
*
* "cmode" [ IN ] - creation mode
*
* "cmode_mask" [ IN ] - if a bit of "cmode_mask" is set (1) then
* the corresponding bit of "cmode" is used for the table,
* otherwise (0) the corresponding bit is taken from db and "cmode"'s
* bit is ignored
* the mask for setting mode (kcmOpen, kcmInit, kcmCreate) is at least
* one bit set in the mask kcmValueMask.
*
* "name" [ IN ] - NUL terminated string in
* db-native character set giving actual table name
*/
/* DEPRECATED */ inline rc_t CreateTable ( VTable **tbl, const char *member,
KCreateMode cmode, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVCreateTable ( this, tbl, member, cmode, name, args );
va_end ( args );
return rc;
}
/* DEPRECATED */ inline rc_t CreateTable ( VTable **tbl, const char *member,
KCreateMode cmode, const char *name, va_list args ) throw ()
{ return VDatabaseVCreateTable ( this, tbl, member, cmode, name, args ); }
inline rc_t CreateTable ( VTable **tbl, const char *member, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVCreateTableDefault ( this, tbl, member, name, args );
va_end ( args );
return rc;
}
inline rc_t CreateTable ( VTable **tbl, const char *member, const char *name, va_list args ) throw ()
{ return VDatabaseVCreateTableDefault ( this, tbl, member, name, args ); }
inline rc_t CreateTable ( VTable **tbl, const char *member,
KCreateMode cmode, KCreateMode cmode_mask, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVCreateTableByMask ( this, tbl, member, cmode, cmode_mask, name, args );
va_end ( args );
return rc;
}
inline rc_t CreateTable ( VTable **tbl, const char *member,
KCreateMode cmode, KCreateMode cmode_mask, const char *name, va_list args ) throw ()
{ return VDatabaseVCreateTableByMask ( this, tbl, member, cmode, cmode_mask, name, args ); }
/* OpenTableRead
* open a table for read under database
* OpenTableUpdate
* open or create a table for read/write under database
*
* "tbl" [ OUT ] - return parameter for newly opened table
*
* "name" [ IN ] - NUL terminated string in
* db-native character set giving name of table member
*/
inline rc_t OpenTable( const VTable **tbl,
const char *name, ... ) const throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVOpenTableRead ( this, tbl, name, args );
va_end ( args );
return rc;
}
inline rc_t OpenTable( const VTable **tbl,
const char *name, va_list args ) const throw ()
{ return VDatabaseVOpenTableRead ( this, tbl, name, args ); }
inline rc_t OpenTable( VTable **tbl, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVOpenTableUpdate ( this, tbl, name, args );
va_end ( args );
return rc;
}
inline rc_t OpenTable( VTable **tbl, const char *name, va_list args ) throw ()
{ return VDatabaseVOpenTableUpdate ( this, tbl, name, args ); }
/* Locked
* returns true if locked
*/
inline bool Locked ( ) const throw ()
{ return VDatabaseLocked ( this ); }
/* Writable
* returns 0 if object is writable
* or a reason why if not
*
* "type" [ IN ] - a KDBPathType
* valid values are kptDatabase, kptTable and kptIndex
*
* "path" [ IN ] - NUL terminated path
*/
inline rc_t Writable ( uint32_t type, const char *name, ... ) const throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVWritable ( this, type, name, args );
va_end ( args );
return rc;
}
inline rc_t Writable ( uint32_t type, const char *name, va_list args ) const throw ()
{ return VDatabaseVWritable ( this, type, name, args ); }
/* Lock
* apply lock
*
* if object is already locked, the operation is idempotent
* and returns an rc state of rcLocked
*
* "type" [ IN ] - a KDBPathType
* valid values are kptDatabase, kptTable and kptIndex
*
* "path" [ IN ] - NUL terminated path
*/
inline rc_t CC Lock ( uint32_t type, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVLock ( this, type, name, args );
va_end ( args );
return rc;
}
inline rc_t CC Lock ( uint32_t type, const char *name, va_list args ) throw ()
{ return VDatabaseVLock ( this, type, name, args ); }
/* Unlock
* remove lock
*
* if object is already unlocked, the operation is idempotent
* and returns an rc state of rcUnlocked
*
* "type" [ IN ] - a KDBPathType
* valid values are kptDatabase, kptTable and kptIndex
*
* "path" [ IN ] - NUL terminated path
*/
inline rc_t CC Unlock ( uint32_t type, const char *name, ... ) throw ()
{
va_list args;
va_start ( args, name );
rc_t rc = VDatabaseVUnlock ( this, type, name, args );
va_end ( args );
return rc;
}
inline rc_t CC Unlock ( uint32_t type, const char *name, va_list args ) throw ()
{ return VDatabaseVUnlock ( this, type, name, args ); }
/* OpenMetadataRead
* OpenMetadataUpdate
* opens metadata file
*
* "meta" [ OUT ] - return parameter for metadata
*/
inline rc_t OpenMetadata ( const KMetadata **meta ) const throw ()
{ return VDatabaseOpenMetadataRead ( this, meta ); }
inline rc_t OpenMetadata ( KMetadata **meta ) throw ()
{ return VDatabaseOpenMetadataUpdate ( this, meta ); }
/* OpenManager
* duplicate reference to manager
* NB - returned reference must be released
*/
inline rc_t OpenManager ( const VDBManager **mgr ) const throw ()
{ return VDatabaseOpenManagerRead ( this, mgr ); }
inline rc_t OpenManager ( VDBManager **mgr ) throw ()
{ return VDatabaseOpenManagerUpdate ( this, mgr ); }
/* OpenParent
* duplicate reference to parent database
* NB - returned reference must be released
*/
inline rc_t OpenParent ( const VDatabase **par ) const throw ()
{ return VDatabaseOpenParentRead ( this, par ); }
inline rc_t OpenParent ( VDatabase **par ) throw ()
{ return VDatabaseOpenParentUpdate ( this, par ); }
/* lists the tables of the database
*
* "names" [ OUT ] - return parameter for table
*/
inline rc_t ListTbl( KNamelist **names ) const throw ()
{ return VDatabaseListTbl( this, names ); }
/* GetUserData
* SetUserData
* store/retrieve an opaque pointer to user data
*
* "data" [ OUT ] - return parameter for getting data
* "data" [ IN ] - parameter for setting data
*
* "destroy" [ IN, NULL OKAY ] - optional destructor param
* invoked from destructor of "self"
*/
inline rc_t GetUserData ( void **data ) const throw ()
{ return VDatabaseGetUserData ( this, data ); }
inline rc_t SetUserData ( void *data,
void ( CC * destroy ) ( void *data ) ) throw ()
{ return VDatabaseSetUserData ( this, data, destroy ); }
private:
VDatabase ();
~ VDatabase ();
VDatabase ( const VDatabase& );
VDatabase &operator = ( const VDatabase& );
};
#endif
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