This file is indexed.

/usr/include/ncbi-vdb/kfs/pmem.h is in libncbi-vdb-dev 2.8.1+dfsg-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/

#ifndef _h_kfs_pmem_
#define _h_kfs_pmem_

#ifndef _h_kfs_extern_
#include <kfs/extern.h>
#endif

#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif

#ifdef __cplusplus
extern "C" {
#endif


/*--------------------------------------------------------------------------
 * forwards
 */
struct KPageFile;


/*--------------------------------------------------------------------------
 * KMemBank
 *  manages simple blocks of memory
 *  optionally backed by a persistent page file
 */
typedef struct KMemBank KMemBank;


/* Make
 *  make a memory bank with a fixed block size
 *  the total amount of memory may be limited
 *  the memory may be drawn from an externally supplied page file
 *
 *  "block_size" [ IN ] - ignored
 *
 *  "limit" [ IN, DFLT ZERO ] - ignored
 *
 *  "backing" [ IN ] - a page source for allocator.
 *  a new reference will be added if not null.
 */
KFS_EXTERN rc_t CC KMemBankMake ( KMemBank **bank,
    size_t block_size, uint64_t limit, struct KFile *backing );


/* AddRef
 * Release
 */
KFS_EXTERN rc_t CC KMemBankAddRef ( const KMemBank *self );
KFS_EXTERN rc_t CC KMemBankRelease ( const KMemBank *self );


/* Alloc
 *  allocate memory
 *
 *  "id" [ OUT ] - return parameter for memory allocation id
 *
 *  "bytes" [ IN ] - the number of bytes to allocate
 *
 *  "clear" [ IN ] - if true, initialize the memory to zero
 */
KFS_EXTERN rc_t CC KMemBankAlloc ( KMemBank *self,
    uint64_t *id, uint64_t bytes, bool clear );


/* Free
 *  free memory
 *
 *  "id" [ IN, ZERO OKAY ] - id of the allocation to be freed
 */
KFS_EXTERN rc_t CC KMemBankFree ( KMemBank *self, uint64_t id );


/* Size
 *  returns the allocated capacity of the memory object
 *
 *  "id" [ IN ] - id of the allocation
 *
 *  "size" [ OUT ] - return parameter
 */
KFS_EXTERN rc_t CC KMemBankSize ( const KMemBank *self, uint64_t id, uint64_t *size );


/* SetSize
 *  performs a reallocation of memory object
 *
 *  "id" [ IN ] - id of the allocation being resized
 *
 *  "size" [ IN ] - new capacity
 */
KFS_EXTERN rc_t CC KMemBankSetSize ( KMemBank *self, uint64_t id, uint64_t size );


/* Read
 *  linearly access memory
 *
 *  "id" [ IN ] - id of the allocation being read
 *
 *  "pos" [ IN ] - starting offset into allocation
 *
 *  "buffer" [ IN ] and "bsize" [ IN ] - buffer for returned data
 *
 *  "num_read" [ OUT ] - return parameter for the number of bytes read
 */
KFS_EXTERN rc_t CC KMemBankRead ( const KMemBank *self, uint64_t id,
   uint64_t pos, void *buffer, size_t bsize, size_t *num_read );


/* Write
 *  linearly update memory
 *  will resize as required
 *
 *  "id" [ IN ] - id of the allocation being writ
 *
 *  "pos" [ IN ] - starting offset into allocation
 *
 *  "buffer" [ IN ] and "size" [ IN ] - data to write
 *
 *  "num_writ" [ OUT ] - return parameter for the number of bytes written
 */
KFS_EXTERN rc_t CC KMemBankWrite ( KMemBank *self, uint64_t id,
    uint64_t pos, const void *buffer, size_t size, size_t *num_writ );


#ifdef __cplusplus
}
#endif

#endif /* _h_kfs_pmem_ */