/usr/include/ncbi-vdb/align/alignsrc.h is in libncbi-vdb-dev 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_align_alignsrc_
#define _h_align_alignsrc_
#ifndef _h_align_extern_
#include <align/extern.h>
#endif
#include <stdint.h>
#include <stdlib.h>
#ifdef __cplusplus
extern "C" {
#endif
/*--------------------------------------------------------------------------
* AlignSrc
* an alignment guy
*/
typedef struct AlignSrc AlignSrc;
/* Make
* create an alignment source object from BAM file
*
* "as" [ OUT ] - return parameter for AlignSrc object
*
* "bam" [ IN ] - NUL terminated path to BAM file
*
* "bai" [ IN, NULL OKAY ] - optional NUL terminated path to BAM index file
*/
ALIGN_EXTERN int CC AlignSrcMakeFromBAM ( const AlignSrc **as, const char *bam, const char *bai );
/* Dispose
* release all resources associated with alignment source
*/
ALIGN_EXTERN int CC AlignSrcDispose ( const AlignSrc *self );
#ifdef __cplusplus
}
#endif
#endif /* _h_align_alignsrc_ */
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