/usr/include/gromacs/fileio/confio.h is in libgromacs-dev 2016.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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#ifndef GMX_FILEIO_CONFIO_H
#define GMX_FILEIO_CONFIO_H
#include "gromacs/math/vectypes.h"
#include "gromacs/utility/basedefinitions.h"
/* For reading coordinate files it is assumed that enough memory
* has been allocated beforehand.
*/
#ifdef __cplusplus
extern "C" {
#endif
struct gmx_mtop_t;
struct t_atoms;
struct t_topology;
void write_sto_conf_indexed(const char *outfile, const char *title,
const t_atoms *atoms,
const rvec x[], const rvec *v, int ePBC, const matrix box,
int nindex, int index[]);
/* like write_sto_conf, but indexed */
void write_sto_conf(const char *outfile, const char *title,
const t_atoms *atoms,
const rvec x[], const rvec *v, int ePBC, const matrix box);
/* write atoms, x, v (if .gro and not NULL) and box (if not NULL)
* to an STO (.gro or .pdb) file */
void write_sto_conf_mtop(const char *outfile, const char *title,
struct gmx_mtop_t *mtop,
const rvec x[], const rvec *v, int ePBC, const matrix box);
/* As write_sto_conf, but uses a gmx_mtop_t struct */
gmx_bool read_tps_conf(const char *infile, struct t_topology *top,
int *ePBC, rvec **x, rvec **v, matrix box, gmx_bool bMass);
/* Read title, top.atoms, x, v (if not NULL) and box from an STX file,
* memory for atoms, x and v will be allocated.
* Return TRUE if a complete topology was read.
* If infile is a TPX file read the whole top,
* else if bMass=TRUE, read the masses into top.atoms from the mass database.
*/
#ifdef __cplusplus
}
#endif
#endif
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