/usr/lib/R/site-library/GenomicRanges/INDEX is in r-bioc-genomicranges 1.16.4-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | Constraints Enforcing constraints thru Constraint objects
GIntervalTree-class GIntervalTree objects
GRanges-class GRanges objects
GRangesList-class GRangesList objects
GenomicRanges-comparison
Comparing and ordering genomic ranges
GenomicRanges-deprecated
Deprecated Functions in package 'GenomicRanges'
GenomicRangesList-class
GenomicRangesList objects
Seqinfo-class Seqinfo objects
SummarizedExperiment-class
SummarizedExperiment instances
coverage-methods Coverage of a GRanges or GRangesList object
findOverlaps-methods Finding overlapping genomic ranges
inter-range-methods Inter range transformations of a GenomicRanges
or GRangesList object
intra-range-methods Intra range transformations of a GRanges or
GRangesList object
makeGRangesFromDataFrame
Make a GRanges object from a data.frame or
DataFrame
map,GenomicRanges,GRangesList-method
Mapping ranges between sequences
nearest-methods Finding the nearest genomic range neighbor
phicoef Calculate the "phi coefficient" between two
binary variables
range-squeezers Squeeze the ranges out of a range-based object
seqinfo Accessing/modifying sequence information
seqlevels-utils seqlevels utility functions
setops-methods Set operations on GRanges and GRangesList
objects
strand-utils Strand utilities
tileGenome Put (virtual) tiles on a given genome
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