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/usr/share/acl2-6.5/books/cgen/cert.acl2 is in acl2-books-source 6.5-2.

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The actual contents of the file can be viewed below.

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(ld "package.lsp")
(include-book "std/portcullis" :dir :system)

; Added by Matt K., 9/28/2013, because defdata ultimately invokes
; with-local-state, which an error message says is disallowed with
; parallelism enabled.
(set-parallel-execution nil)

; Added by Jared, justified by ACL2_COMPILE_FLG setting in Makefile
; cert-flags: ? t :ttags :all